Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002769.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

87132 .. 89317

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002769.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgcttcctgagaactgcgtccatggagcctctgattccggcgtccaggacagccatgacaggcaaggaaatcctccacaagatgaagcactatcgctggttacattgaaaacagttttgatgcttgcagatcaattaattaacagagtcgagtacatgcactcgagaggtttccttcatcgtgatataaaacctgacaactttttaatgggcctagggcgtaaagccaatcaggggagagaaggcaatgtcactgttggagagtgggctaaaggtgaaggagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

95

Amino Acids

10.45

Weight (kDa)

5.72

Isoelectric Point (pI)

18.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	137
AspA2I	CCTAGG	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	163
AvrII	CCTAGG	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	22, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	22, 214
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	22
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	22, 214
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	22, 214
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	115, 256
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	7, 31
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	23, 56, 157
CviJI	RGCY	5 cut(s)	29, 54, 213, 227, 269
CviKI_1	RGCY	5 cut(s)	29, 54, 213, 227, 269
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	22, 214
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	22, 214
ErhI	CCWWGG	2 cut(s)	22, 214
FaeI	CATG	3 cut(s)	26, 59, 160
FaiI	YATR	4 cut(s)	24, 57, 158, 188
FatI	CATG	3 cut(s)	22, 55, 156
FspBI	CTAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	2 cut(s)	7, 31
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	26, 59, 160
HinfI	GANTC	2 cut(s)	35, 147
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	8, 165, 182
HpyAV	CCTTC	3 cut(s)	185, 236, 272
HpyCH4III	ACNGT	2 cut(s)	115, 256
HpyCH4V	TGCA	2 cut(s)	128, 160
HpyF3I	CTNAG	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	26, 59, 160
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	8 cut(s)	21, 32, 46, 52, 59, 83, 207, 218
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	100, 250
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MluCI	AATT	2 cut(s)	134, 138
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	40, 84, 161
MseI	TTAA	3 cut(s)	137, 141, 206
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	26, 59, 160
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	160
PacI	TTAATTAA	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	45
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	137, 141, 206
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	3 cut(s)	172, 196, 277
SfaNI	GCATC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	134, 138
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	22, 214
TaaI	ACNGT	2 cut(s)	115, 256
TaqI	TCGA	2 cut(s)	150, 164
TasI	AATT	2 cut(s)	134, 138
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	137, 141, 206
Tru9I	TTAA	3 cut(s)	137, 141, 206
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	99, 167
TspRI	CASTG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	137
XceI	RCATGY	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	163
XmaJI	CCTAGG	1 cut(s)	214
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.