Rmu_sc0002792.1_g000020

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002792.1
OG0031227
Physical Location & Seq
Reverse (-)
64069 .. 66322
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atggccgccgcgaccctccctccctcctctcctcaccttctcttcccgccgtcgccgtcttctttctttgctctcagcgggtcccacaagagcttcgcgtcactcaattttactactcgtccgtggaacaagttgagtacgaaacgccgcgttgggacggtgtttgccgcttccggtgattactacgccactctcggggttaataaagccgccactagcaaggaaatcaaaaccgcttttcaaagattagctcgccaggaggccgagaagctgcacagctcgagctggaattcgcccgatgctgctcttccttcaccggccgatatctctctgatccgacctcgaatcgagttgattccaaaagggatttttctgggcttgagctatattacaactttacagaagacatcgaggggaattaaccaacgtggtagccgctacaagtcgaagaacacggtgcagtcgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

156

Amino Acids

16.98

Weight (kDa)

10.7

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031227)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002792.1_g000020 Rmu_sc0003543.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 11, 98, 150
AciI CCGC 9 cut(s) 6, 9, 47, 78, 148, 168, 210, 234, 436
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 3, 318
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 7 cut(s) 93, 251, 271, 279, 285, 384, 468
AluI AGCT 7 cut(s) 93, 251, 271, 279, 285, 384, 468
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 2 cut(s) 194, 280
AoxI GGCC 3 cut(s) 3, 261, 318
ApeKI GCWGC 2 cut(s) 271, 302
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 26, 188, 306
AvaI CYCGRG 2 cut(s) 194, 280
AvaII GGWCC 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 51, 410
BbvI GCAGC 2 cut(s) 258, 289
BceAI ACGGC 2 cut(s) 34, 40
BciT130I CCWGG 1 cut(s) 257
BfaI CTAG 1 cut(s) 216
BisI GCNGC 8 cut(s) 6, 9, 148, 168, 210, 272, 303, 436
BlsI GCNGC 8 cut(s) 7, 10, 149, 169, 211, 273, 304, 437
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 81
BmeT110I CYCGRG 2 cut(s) 194, 280
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 82, 83
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 51, 410
BpuEI CTTGAG 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 316
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 16, 21
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 2 cut(s) 258, 289
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 3 cut(s) 11, 98, 150
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 3 cut(s) 5, 263, 320
BsiEI CGRYCG 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 194, 280
BsiSI CCGG 2 cut(s) 174, 317
BslFI GGGAC 2 cut(s) 67, 169
BslI CCNNNNNNNGG 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 67, 169
BsnI GGCC 3 cut(s) 5, 263, 320
BsoBI CYCGRG 2 cut(s) 194, 280
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 9 cut(s) 6, 9, 47, 78, 148, 168, 210, 234, 436
BspANI GGCC 3 cut(s) 5, 263, 320
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 3 cut(s) 11, 98, 150
BspLI GGNNCC 2 cut(s) 82, 83
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 160, 457
Bst6I CTCTTC 2 cut(s) 47, 312
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 3 cut(s) 11, 98, 150
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMCI CGRYCG 1 cut(s) 321
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstUI CGCG 3 cut(s) 11, 98, 150
BstV1I GCAGC 2 cut(s) 258, 289
BstV2I GAAGAC 2 cut(s) 51, 410
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 3 cut(s) 5, 263, 320
BtgI CCRYGG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 138
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EaeI YGGCCR 2 cut(s) 3, 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 47, 312
EarI CTCTTC 2 cut(s) 47, 312
EclXI CGGCCG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 318
Eco88I CYCGRG 2 cut(s) 194, 280
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 325
FaiI YATR 1 cut(s) 387
FaqI GGGAC 2 cut(s) 67, 169
FauI CCCGC 2 cut(s) 54, 71
Fnu4HI GCNGC 8 cut(s) 6, 9, 148, 168, 210, 272, 303, 436
Fsp4HI GCNGC 8 cut(s) 6, 9, 148, 168, 210, 272, 303, 436
FspBI CTAG 1 cut(s) 216
GluI GCNGC 8 cut(s) 6, 9, 148, 168, 210, 272, 303, 436
HaeIII GGCC 3 cut(s) 5, 263, 320
HapII CCGG 2 cut(s) 174, 317
HgaI GACGC 1 cut(s) 87
HinfI GANTC 2 cut(s) 345, 355
HpaII CCGG 2 cut(s) 174, 317
HphI GGTGA 3 cut(s) 26, 188, 306
Hpy188I TCNGA 2 cut(s) 333, 338
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 47, 321
HpyCH4III ACNGT 2 cut(s) 160, 457
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 274, 460
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 427
KflI GGGWCCC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 333
LguI GCTCTTC 1 cut(s) 312
LpnPI CCDG 6 cut(s) 187, 242, 269, 271, 330, 359
Lsp1109I GCAGC 2 cut(s) 258, 289
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 99
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 5 cut(s) 34, 51, 299, 415, 460
MluCI AATT 3 cut(s) 106, 289, 417
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 8 cut(s) 26, 30, 34, 37, 42, 253, 351, 405
MseI TTAA 2 cut(s) 201, 420
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 174, 317
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 3 cut(s) 11, 98, 150
NdeII GATC 1 cut(s) 333
NlaIV GGNNCC 2 cut(s) 82, 83
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PfeI GAWTC 2 cut(s) 345, 355
PkrI GCNGC 8 cut(s) 7, 10, 149, 169, 211, 273, 304, 437
PpuMI RGGWCCY 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 82, 83
PspPI GGNCC 1 cut(s) 81
PspPPI RGGWCCY 1 cut(s) 81
PspXI VCTCGAGB 1 cut(s) 280
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 201, 420
SatI GCNGC 8 cut(s) 6, 9, 148, 168, 210, 272, 303, 436
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 257
SfaNI GCATC 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 280, 379
SmoI CTYRAG 2 cut(s) 280, 379
Sse9I AATT 3 cut(s) 106, 289, 417
SsiI CCGC 9 cut(s) 6, 9, 47, 78, 148, 168, 210, 234, 436
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 160, 457
TaiI ACGT 1 cut(s) 430
TaqI TCGA 6 cut(s) 281, 343, 348, 410, 446, 464
TasI AATT 3 cut(s) 106, 289, 417
TauI GCSGC 6 cut(s) 8, 11, 150, 170, 212, 438
TfiI GAWTC 2 cut(s) 345, 355
Tru1I TTAA 2 cut(s) 201, 420
Tru9I TTAA 2 cut(s) 201, 420
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 2 cut(s) 271, 302
Tsp45I GTSAC 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 280
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.