Rmu_sc0002824.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002824.1
N/A
Physical Location & Seq
Reverse (-)
172808 .. 174401
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atggttgacaggacaaaagaagctcgagatatgtatgagaggcttcaatcccacccaactgctagagtaagcaagaaagcgaggcaatttatgttcagctttcaggccatggaaatgatgaagtttacaaggagctcaccttggaggaacactgactaccagaatttttttgaagctttcattgacaacaaatctgactacgtgctggaagatggtgaagtcgaagtaggcactctgaaatttgaagaaaaactccacaaaaaaagtgggtcgaagtccaagcagaaagcccacccggatcccagatccagatccaaagttggatccatttgcaaaaccagattcggtgcatgtggctcatccaccatgtccaccgccgactcgaaagcagctttccagcccatcaatgtcgtagctccaaagaagagaaacctctgctatctgcaccaccgatggacccagacagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.07

Weight (kDa)

9.74

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 375
AclWI GGATC 6 cut(s) 293, 300, 306, 306, 318, 331
AcsI RAATTY 2 cut(s) 163, 239
AgsI TTSAA 3 cut(s) 47, 173, 245
AluBI AGCT 6 cut(s) 23, 99, 135, 176, 392, 416
AluI AGCT 6 cut(s) 23, 99, 135, 176, 392, 416
Alw21I GWGCWC 1 cut(s) 137
AlwI GGATC 6 cut(s) 293, 300, 306, 306, 318, 331
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 163, 239
AspS9I GGNCC 1 cut(s) 456
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 129, 227
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 456
BamHI GGATCC 2 cut(s) 298, 323
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 401
BccI CCATC 3 cut(s) 206, 410, 447
BcnI CCSGG 1 cut(s) 296
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 3 cut(s) 300, 325, 458
BmrFI CCNGG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 108, 140
Bse8I GATNNNNATC 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 108, 140
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 428
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 298, 305, 311, 323
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 300, 325, 458
BspPI GGATC 6 cut(s) 293, 300, 306, 306, 318, 331
BssECI CCNNGG 2 cut(s) 108, 140
BssMI GATC 4 cut(s) 298, 305, 311, 323
BssT1I CCWWGG 2 cut(s) 108, 140
Bst6I CTCTTC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 359
BstKTI GATC 4 cut(s) 301, 308, 314, 326
BstMBI GATC 4 cut(s) 298, 305, 311, 323
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 4 cut(s) 298, 305, 311, 323
BstYI RGATCY 4 cut(s) 298, 305, 311, 323
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 456
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 109, 351, 367
DpnI GATC 4 cut(s) 300, 307, 313, 325
DpnII GATC 4 cut(s) 298, 305, 311, 323
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 108, 140
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 108, 140
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 108, 140
FaeI CATG 3 cut(s) 112, 354, 370
FaiI YATR 6 cut(s) 32, 36, 92, 110, 352, 368
FatI CATG 3 cut(s) 108, 350, 366
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 296
Hin1II CATG 3 cut(s) 112, 354, 370
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 2 cut(s) 342, 380
HpaII CCGG 1 cut(s) 296
HphI GGTGA 2 cut(s) 129, 227
Hpy166II GTNNAC 3 cut(s) 7, 126, 372
Hpy188I TCNGA 2 cut(s) 196, 237
Hpy188III TCNNGA 2 cut(s) 26, 309
Hpy8I GTNNAC 3 cut(s) 7, 126, 372
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 333, 350, 445
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 112, 354, 370
Kzo9I GATC 4 cut(s) 298, 305, 311, 323
LmnI GCTCC 2 cut(s) 132, 421
LpnPI CCDG 8 cut(s) 89, 173, 191, 309, 316, 322, 352, 410
Lsp1109I GCAGC 1 cut(s) 401
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 300, 307, 313, 325
MboI GATC 4 cut(s) 298, 305, 311, 323
MboII GAAGA 3 cut(s) 221, 257, 436
MflI RGATCY 4 cut(s) 298, 305, 311, 323
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 86, 163, 239
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 4 cut(s) 33, 75, 138, 443
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 296
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 108
NdeII GATC 4 cut(s) 298, 305, 311, 323
NlaIII CATG 3 cut(s) 112, 354, 370
NlaIV GGNNCC 3 cut(s) 300, 325, 458
NspI RCATGY 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 300, 325, 458
PspPI GGNCC 1 cut(s) 456
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PsuI RGATCY 4 cut(s) 298, 305, 311, 323
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 137
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 4 cut(s) 298, 305, 311, 323
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 137
SetI ASST 9 cut(s) 25, 101, 137, 142, 178, 204, 394, 418, 435
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 456
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 3 cut(s) 86, 163, 239
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 108, 140
TaiI ACGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 25, 222, 272, 383
TasI AATT 3 cut(s) 86, 163, 239
TfiI GAWTC 1 cut(s) 342
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 134, 169
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 2 cut(s) 163, 239
XceI RCATGY 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.