Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002826.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80840 .. 82851

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggggaagaaggtggctataataggagctgggatcagtggccttcttgcctgcaagtacaccctttccaagggctttcaacccatcgtgttcgaatcctcgagcaccatcggaggggtatggaccaaaactattaagagtaccaagctccaaactcctaaagcagtctaccaattctcagattttccatggccttcttcagtgacagaggactttccaaagcagcatcaagttatggattacatccaatcatacgctcaacatttcgacttgctcaggcacatcaaattcaataccaaagtgtgtggtatagagcatgaaggcccatctgaggatgagatgcaatcatggagtctctggggcggcaccggtgagcctttcagctcgaaagggaaatggaaagttatggtagaagacaaacaaagcccttcaactgaggtttacttggtagactttgtagtcctctgcattggacgattcagtggtattccaaacattcctaaatttcctccgaacaagggtccagaagaatttcatggtgatgtcatacgctcgatggaatatgcttccaaggatcatgaaagtgcggctgaatttgtgaaaggaaagcaagtaacagttgttgggtttcagaaatctgcattggacattgcaatggagtgctcaaatgcaaatggggtagaacatccatgtacagtgttgtacaagacagaacactggaatgttcctgcccgtgtgcctctcgaatacctatacctcaatcgcttctcggagcttttggttcataagcctggcgacgaggctgttgaggcgtccttcaaggcgcgaaaggcgtcaaaaacagagcacaaggcgttaaaggcgtacgctcaggaaaaaaagaaaactgacgtcgttttggtcttttggaacagattgggtttaaaggctacagaggtcgcgactgaaggtgttggacaaccgatttcagccctctctcttccaaaaggtatcggagctcgattcgcagcaggccatttgaagggattggagttcgattcgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

348

Amino Acids

38.65

Weight (kDa)

8.4

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 293	8.9e-32	Flavin-binding monooxygenase-like
Pyr_redox_3	PF13738	145 - 295	4.8e-06	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AatII	GACGTC	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	168, 450
AccII	CGCG	2 cut(s)	826, 941
AciI	CCGC	2 cut(s)	363, 587
AclWI	GGATC	2 cut(s)	41, 582
AcsI	RAATTY	4 cut(s)	287, 503, 530, 593
AcuI	CTGAAG	2 cut(s)	183, 966
AcyI	GRCGYC	3 cut(s)	812, 833, 891
AfaI	GTAC	5 cut(s)	59, 142, 694, 704, 866
AfiI	CCNNNNNNNGG	5 cut(s)	70, 114, 331, 518, 1021
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	80, 292, 432, 820, 1021
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	5 cut(s)	29, 148, 384, 775, 998
AluI	AGCT	5 cut(s)	29, 148, 384, 775, 998
Alw21I	GWGCWC	4 cut(s)	107, 665, 849, 1000
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	41, 582
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	4 cut(s)	40, 191, 322, 1012
ApeKI	GCWGC	2 cut(s)	223, 1007
ApoI	RAATTY	4 cut(s)	287, 503, 530, 593
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	3 cut(s)	123, 323, 521
AsuHPI	GGTGA	2 cut(s)	383, 551
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	123, 521
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	1000
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	4 cut(s)	107, 665, 849, 1000
BbvI	GCAGC	2 cut(s)	235, 1019
BccI	CCATC	4 cut(s)	92, 116, 334, 550
BciT130I	CCWGG	1 cut(s)	792
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	930
BisI	GCNGC	4 cut(s)	224, 364, 588, 1008
BlsI	GCNGC	4 cut(s)	225, 365, 589, 1009
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	2 cut(s)	123, 521
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	123, 323, 521
BmiI	GGNNCC	2 cut(s)	367, 522
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	235, 330
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	275, 870
Bpu14I	TTCGAA	1 cut(s)	93
BsaHI	GRCGYC	3 cut(s)	812, 833, 891
BsaJI	CCNNGG	3 cut(s)	69, 188, 570
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 114, 331, 518, 1021
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	722
Bse3DI	GCAATG	2 cut(s)	648, 660
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	69, 188, 570
BseGI	GGATG	3 cut(s)	243, 340, 685
BseLI	CCNNNNNNNGG	5 cut(s)	70, 114, 331, 518, 1021
BseMI	GCAATG	2 cut(s)	648, 660
BseMII	CTCAG	5 cut(s)	192, 289, 321, 426, 884
BseNI	ACTGG	1 cut(s)	722
BseXI	GCAGC	2 cut(s)	235, 1019
BseYI	CCCAGC	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	826, 941
BshFI	GGCC	4 cut(s)	42, 193, 324, 1014
BshNI	GGYRCC	1 cut(s)	365
BshTI	ACCGGT	1 cut(s)	368
BsiHKAI	GWGCWC	4 cut(s)	107, 665, 849, 1000
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	369
BsiWI	CGTACG	1 cut(s)	864
BslI	CCNNNNNNNGG	5 cut(s)	70, 114, 331, 518, 1021
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	42, 193, 324, 1014
BsoBI	CYCGRG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	4 cut(s)	107, 665, 849, 1000
Bsp1407I	TGTACA	2 cut(s)	692, 702
Bsp143I	GATC	2 cut(s)	33, 574
Bsp19I	CCATGG	1 cut(s)	188
Bsp68I	TCGCGA	1 cut(s)	941
BspACI	CCGC	2 cut(s)	363, 587
BspANI	GGCC	4 cut(s)	42, 193, 324, 1014
BspCNI	CTCAG	5 cut(s)	191, 288, 322, 427, 883
BspFNI	CGCG	2 cut(s)	826, 941
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	367, 522
BspPI	GGATC	2 cut(s)	41, 582
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	648, 660
BsrFI	RCCGGY	1 cut(s)	368
BsrGI	TGTACA	2 cut(s)	692, 702
BsrI	ACTGG	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	69, 188, 570
BssMI	GATC	2 cut(s)	33, 574
BssNI	GRCGYC	3 cut(s)	812, 833, 891
BssT1I	CCWWGG	3 cut(s)	69, 188, 570
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	619, 697
Bst6I	CTCTTC	1 cut(s)	984
BstACI	GRCGYC	3 cut(s)	812, 833, 891
BstAUI	TGTACA	2 cut(s)	692, 702
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	52, 1012
BstDEI	CTNAG	5 cut(s)	178, 275, 330, 435, 870
BstDSI	CCRYGG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	243, 340, 685
BstFNI	CGCG	2 cut(s)	826, 941
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	2 cut(s)	36, 577
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	2 cut(s)	33, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	809, 830, 860, 1004
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	930
BstUI	CGCG	2 cut(s)	826, 941
BstV1I	GCAGC	2 cut(s)	235, 1019
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	4 cut(s)	42, 193, 324, 1014
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	243, 340, 685
BtsIMutI	CAGTG	5 cut(s)	43, 207, 487, 702, 715
BtuMI	TCGCGA	1 cut(s)	941
Cac8I	GCNNGC	2 cut(s)	52, 1012
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	826
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	123, 323, 521
CseI	GACGC	2 cut(s)	801, 822
Csp6I	GTAC	5 cut(s)	58, 141, 693, 703, 865
CspAI	ACCGGT	1 cut(s)	368
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	6 cut(s)	189, 317, 348, 536, 578, 690
CviQI	GTAC	5 cut(s)	58, 141, 693, 703, 865
DdeI	CTNAG	5 cut(s)	178, 275, 330, 435, 870
DpnI	GATC	2 cut(s)	35, 576
DpnII	GATC	2 cut(s)	33, 574
DraI	TTTAAA	1 cut(s)	924
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	984
EarI	CTCTTC	1 cut(s)	984
Ecl136II	GAGCTC	1 cut(s)	998
Eco130I	CCWWGG	3 cut(s)	69, 188, 570
Eco24I	GRGCYC	1 cut(s)	1000
Eco47I	GGWCC	2 cut(s)	123, 521
Eco53kI	GAGCTC	1 cut(s)	998
Eco57I	CTGAAG	2 cut(s)	183, 966
Eco88I	CYCGRG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	998
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	3 cut(s)	69, 188, 570
EcoT38I	GRGCYC	1 cut(s)	1000
ErhI	CCWWGG	3 cut(s)	69, 188, 570
FaeI	CATG	6 cut(s)	192, 320, 351, 539, 581, 693
FatI	CATG	6 cut(s)	188, 316, 347, 535, 577, 689
FblI	GTMKAC	2 cut(s)	168, 450
Fnu4HI	GCNGC	4 cut(s)	224, 364, 588, 1008
FokI	GGATG	3 cut(s)	230, 347, 672
FriOI	GRGCYC	1 cut(s)	1000
Fsp4HI	GCNGC	4 cut(s)	224, 364, 588, 1008
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	4 cut(s)	224, 364, 588, 1008
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	42, 193, 324, 1014
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	2 cut(s)	801, 822
HhaI	GCGC	1 cut(s)	826
Hin1I	GRCGYC	3 cut(s)	812, 833, 891
Hin1II	CATG	6 cut(s)	192, 320, 351, 539, 581, 693
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HinfI	GANTC	5 cut(s)	95, 352, 477, 1002, 1037
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	383, 551
Hpy166II	GTNNAC	4 cut(s)	60, 169, 442, 451
Hpy188I	TCNGA	7 cut(s)	113, 181, 331, 513, 633, 772, 995
Hpy188III	TCNNGA	5 cut(s)	524, 578, 743, 872, 940
Hpy8I	GTNNAC	4 cut(s)	60, 169, 442, 451
Hpy99I	CGWCG	2 cut(s)	800, 896
HpyAV	CCTTC	8 cut(s)	4, 53, 204, 314, 438, 826, 941, 1015
HpyCH4III	ACNGT	2 cut(s)	619, 697
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	6 cut(s)	54, 343, 468, 641, 653, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	809, 830, 860, 1004
HpyF3I	CTNAG	5 cut(s)	178, 275, 330, 435, 870
HpySE526I	ACGT	1 cut(s)	891
Hsp92I	GRCGYC	3 cut(s)	812, 833, 891
Hsp92II	CATG	6 cut(s)	192, 320, 351, 539, 581, 693
HspAI	GCGC	1 cut(s)	824
Kzo9I	GATC	2 cut(s)	33, 574
LmnI	GCTCC	4 cut(s)	26, 153, 772, 995
Lsp1109I	GCAGC	2 cut(s)	235, 1019
LweI	GCATC	2 cut(s)	235, 330
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	2 cut(s)	202, 613
MalI	GATC	2 cut(s)	35, 576
MboI	GATC	2 cut(s)	33, 574
MboII	GAAGA	5 cut(s)	19, 189, 425, 539, 971
MhlI	GDGCHC	4 cut(s)	107, 665, 849, 1000
MluCI	AATT	5 cut(s)	173, 287, 503, 530, 593
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	934
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	135, 857, 923
MslI	CAYNNNNRTG	4 cut(s)	540, 582, 653, 720
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	792
MvnI	CGCG	2 cut(s)	826, 941
MwoI	GCNNNNNNNGC	4 cut(s)	809, 830, 860, 1004
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	33, 574
NlaIII	CATG	6 cut(s)	192, 320, 351, 539, 581, 693
NlaIV	GGNNCC	2 cut(s)	367, 522
NmuCI	GTSAC	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	941
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	95, 477, 1002, 1037
Pfl23II	CGTACG	1 cut(s)	864
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	225, 365, 589, 1009
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	1000
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	790
PspLI	CGTACG	1 cut(s)	864
PspN4I	GGNNCC	2 cut(s)	367, 522
PspPI	GGNCC	3 cut(s)	123, 323, 521
PspXI	VCTCGAGB	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	941
RsaI	GTAC	5 cut(s)	59, 142, 694, 704, 866
RsaNI	GTAC	5 cut(s)	58, 141, 693, 703, 865
RseI	CAYNNNNRTG	4 cut(s)	540, 582, 653, 720
SacI	GAGCTC	1 cut(s)	1000
SaqAI	TTAA	3 cut(s)	135, 857, 923
SatI	GCNGC	4 cut(s)	224, 364, 588, 1008
Sau3AI	GATC	2 cut(s)	33, 574
Sau96I	GGNCC	3 cut(s)	123, 323, 521
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	4 cut(s)	107, 665, 849, 1000
SfaNI	GCATC	2 cut(s)	235, 330
SfcI	CTRYAG	1 cut(s)	930
Sfr274I	CTCGAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	123, 521
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	4 cut(s)	540, 582, 653, 720
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	5 cut(s)	173, 287, 503, 530, 593
SsiI	CCGC	2 cut(s)	363, 587
SstI	GAGCTC	1 cut(s)	1000
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	3 cut(s)	69, 188, 570
TaaI	ACNGT	2 cut(s)	619, 697
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	8 cut(s)	93, 101, 267, 386, 554, 744, 1000, 1035
TasI	AATT	5 cut(s)	173, 287, 503, 530, 593
TatI	WGTACW	3 cut(s)	57, 692, 702
TauI	GCSGC	2 cut(s)	366, 590
TfiI	GAWTC	4 cut(s)	95, 477, 1002, 1037
Tru1I	TTAA	3 cut(s)	135, 857, 923
Tru9I	TTAA	3 cut(s)	135, 857, 923
TscAI	CASTG	5 cut(s)	43, 207, 487, 702, 722
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	223, 1007
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	333, 524, 594, 773
TspRI	CASTG	5 cut(s)	43, 207, 487, 702, 722
VpaK11BI	GGWCC	2 cut(s)	123, 521
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	4 cut(s)	287, 503, 530, 593
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	2 cut(s)	168, 450
XmnI	GAANNNNTTC	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.