Rmu_sc0002832.1_g000017

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002832.1
N/A
Physical Location & Seq
Forward (+)
102087 .. 102605
519 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atggcgacctggttcttcctcatagtaactaccctattcatctctgttcttgtcaaaaccattctcagtctaatctcaacaaacaaactccctcctggacctgtcaccattcccataatcagcagcttgttatggctccgccagtcgccttatgagatggaactcgcactcagaaaactccatggccaatacggacccattttcaccctcaatctcggctcccgccctaagatattcgtcggcagcagctccctggctcaccaggccttagtccagaacggggctgtgtttgcagacaggccaccggccttggctaccgataagatcatcactagtaatcaacacaacatcagctctgcaccgtatggacttacatggcggctcctccgtcgcaaccgaaatcctccacccttcccgcgtcaaatcctattccggggcccgcaagtgggtcctcgacatcctcgccaaccgcctaacggaatcccaatccaacggagggggaggagtcaaagtcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

172

Amino Acids

19.27

Weight (kDa)

12.0

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 135 1.8e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 418
AciI CCGC 6 cut(s) 139, 223, 379, 416, 440, 470
AcoI YGGCCR 1 cut(s) 184
AfiI CCNNNNNNNGG 6 cut(s) 280, 433, 445, 446, 476, 496
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 4 cut(s) 8, 94, 252, 261
AluBI AGCT 3 cut(s) 126, 249, 354
AluI AGCT 3 cut(s) 126, 249, 354
AoxI GGCC 5 cut(s) 184, 264, 299, 306, 436
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 123, 243, 246
AspS9I GGNCC 5 cut(s) 98, 194, 436, 437, 449
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 3 cut(s) 97, 196, 251
AvaII GGWCC 3 cut(s) 98, 194, 449
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 186
BanII GRGCYC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 135, 255, 258
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 4 cut(s) 10, 96, 254, 263
BcnI CCSGG 1 cut(s) 434
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BisI GCNGC 4 cut(s) 124, 244, 247, 380
BlsI GCNGC 4 cut(s) 125, 245, 248, 381
Bme1390I CCNGG 5 cut(s) 10, 96, 254, 263, 434
Bme18I GGWCC 3 cut(s) 98, 194, 449
BmgT120I GGNCC 5 cut(s) 98, 194, 436, 437, 449
BmiI GGNNCC 7 cut(s) 137, 196, 220, 383, 437, 438, 450
BmrFI CCNGG 5 cut(s) 10, 96, 254, 263, 434
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 181, 252, 309, 433
BsaXI ACNNNNNCTCC 1 cut(s) 496
Bsc4I CCNNNNNNNGG 6 cut(s) 280, 433, 445, 446, 476, 496
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 4 cut(s) 10, 96, 254, 263
BseDI CCNNGG 4 cut(s) 181, 252, 309, 433
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 6 cut(s) 280, 433, 445, 446, 476, 496
BseMII CTCAG 2 cut(s) 79, 184
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 374, 517
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 3 cut(s) 135, 255, 258
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 418
BshFI GGCC 5 cut(s) 186, 266, 301, 308, 438
BsiSI CCGG 2 cut(s) 305, 433
BslI CCNNNNNNNGG 6 cut(s) 280, 433, 445, 446, 476, 496
BsnI GGCC 5 cut(s) 186, 266, 301, 308, 438
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 6 cut(s) 139, 223, 379, 416, 440, 470
BspANI GGCC 5 cut(s) 186, 266, 301, 308, 438
BspCNI CTCAG 2 cut(s) 78, 183
BspFNI CGCG 1 cut(s) 418
BspLI GGNNCC 7 cut(s) 137, 196, 220, 383, 437, 438, 450
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 181, 252, 309, 433
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 2 cut(s) 181, 309
Bst2UI CCWGG 4 cut(s) 10, 96, 254, 263
Bst4CI ACNGT 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 4 cut(s) 65, 170, 228, 268
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 418
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 263, 290
BstNI CCWGG 4 cut(s) 10, 96, 254, 263
BstSCI CCNGG 5 cut(s) 8, 94, 252, 261, 432
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 135, 255, 258
BsuRI GGCC 5 cut(s) 186, 266, 301, 308, 438
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 5 cut(s) 98, 194, 436, 437, 449
CseI GACGC 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 2 cut(s) 182, 375
DdeI CTNAG 4 cut(s) 65, 170, 228, 268
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 184
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 181, 309
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 440
Eco47I GGWCC 3 cut(s) 98, 194, 449
EcoO109I RGGNCCY 2 cut(s) 436, 449
EcoRII CCWGG 4 cut(s) 8, 94, 252, 261
EcoT14I CCWWGG 2 cut(s) 181, 309
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 181, 309
FaeI CATG 2 cut(s) 185, 378
FaiI YATR 7 cut(s) 23, 116, 133, 153, 183, 366, 376
FatI CATG 2 cut(s) 181, 374
FauI CCCGC 3 cut(s) 230, 423, 447
Fnu4HI GCNGC 4 cut(s) 124, 244, 247, 380
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 124, 244, 247, 380
FspBI CTAG 1 cut(s) 333
GluI GCNGC 4 cut(s) 124, 244, 247, 380
HaeIII GGCC 5 cut(s) 186, 266, 301, 308, 438
HapII CCGG 2 cut(s) 305, 433
HgaI GACGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 185, 378
HinfI GANTC 2 cut(s) 480, 505
HpaII CCGG 2 cut(s) 305, 433
HphI GGTGA 3 cut(s) 97, 196, 251
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 242, 393
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 293, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 290
HpyF3I CTNAG 4 cut(s) 65, 170, 228, 268
Hsp92II CATG 2 cut(s) 185, 378
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 4 cut(s) 141, 224, 254, 387
Lsp1109I GCAGC 3 cut(s) 135, 255, 258
MabI ACCWGGT 1 cut(s) 8
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 25, 103
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 9 cut(s) 29, 102, 218, 395, 414, 462, 471, 489, 495
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 2 cut(s) 305, 433
MspR9I CCNGG 5 cut(s) 10, 96, 254, 263, 434
MvaI CCWGG 4 cut(s) 10, 96, 254, 263
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 2 cut(s) 263, 290
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 324
NlaIII CATG 2 cut(s) 185, 378
NlaIV GGNNCC 7 cut(s) 137, 196, 220, 383, 437, 438, 450
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 103
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 4 cut(s) 125, 245, 248, 381
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
PpuMI RGGWCCY 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 4 cut(s) 8, 94, 252, 261
PspGI CCWGG 4 cut(s) 8, 94, 252, 261
PspN4I GGNNCC 7 cut(s) 137, 196, 220, 383, 437, 438, 450
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 5 cut(s) 98, 194, 436, 437, 449
PspPPI RGGWCCY 1 cut(s) 449
SatI GCNGC 4 cut(s) 124, 244, 247, 380
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 5 cut(s) 98, 194, 436, 437, 449
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 5 cut(s) 10, 96, 254, 263, 434
SduI GDGCHC 1 cut(s) 440
SetI ASST 5 cut(s) 11, 103, 128, 251, 356
SexAI ACCWGGT 1 cut(s) 8
SinI GGWCC 3 cut(s) 98, 194, 449
SpeI ACTAGT 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 6 cut(s) 139, 223, 379, 416, 440, 470
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 5 cut(s) 8, 94, 252, 261, 432
StyI CCWWGG 2 cut(s) 181, 309
TaaI ACNGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 454
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 480
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 3 cut(s) 123, 243, 246
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 4 cut(s) 207, 377, 492, 508
VpaK11BI GGWCC 3 cut(s) 98, 194, 449
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.