Rmu_sc0002833.1_g000020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002833.1
N/A
Physical Location & Seq
Reverse (-)
88772 .. 89233
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
atgttctgctctagattccgcactgttgcatatcttcagcaaatatggtggtttgaggtagatggggaggttgagttcccatttccagccgggaaatacagcttgtattttaggttgcagctgggacgctcttctcagaagaggtttggtcaccgtgtttgcaacaaagagcatgtccatggctgggacagaaaaccagtgaggttccaactatggactcgattcagtgaactcttgaaatcaacactggaggaagcagcgatcgttggtggatgcagaatgcttgactgtgtgaaccaccaccacagttccgccactggaatgccaagcagctcaaggtcaacactggaggaagcagcgatcgttggtggatgcagaatgcttgactgtgtgaaccaccaccacagctccgccactggaatgccaagcagctcaaataggcaactttgtacccttctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

153

Amino Acids

17.49

Weight (kDa)

8.96

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 4 - 74 2.8e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 312, 411
AcuI CTGAAG 1 cut(s) 20
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 102, 121, 333, 408, 432
AluI AGCT 5 cut(s) 102, 121, 333, 408, 432
ApeKI GCWGC 5 cut(s) 118, 257, 330, 356, 429
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 143
BbvI GCAGC 5 cut(s) 130, 269, 342, 368, 441
BccI CCATC 1 cut(s) 56
BcnI CCSGG 1 cut(s) 91
BfaI CTAG 1 cut(s) 12
BisI GCNGC 5 cut(s) 119, 258, 331, 357, 430
BlsI GCNGC 5 cut(s) 120, 259, 332, 358, 431
Bme1390I CCNGG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 263, 362
BpmI CTGGAG 2 cut(s) 269, 368
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 392, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 5 cut(s) 197, 252, 322, 351, 421
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 278, 377
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 5 cut(s) 197, 252, 322, 351, 421
BseXI GCAGC 5 cut(s) 130, 269, 342, 368, 441
BseYI CCCAGC 2 cut(s) 121, 183
Bsh1285I CGRYCG 2 cut(s) 264, 363
BsiEI CGRYCG 2 cut(s) 264, 363
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 138, 200
BslI CCNNNNNNNGG 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 138, 200
BsmI GAATGC 4 cut(s) 285, 327, 384, 426
Bsp143I GATC 2 cut(s) 261, 360
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 3 cut(s) 19, 312, 411
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 136
BsrI ACTGG 5 cut(s) 197, 252, 322, 351, 421
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 261, 360
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 5 cut(s) 25, 155, 290, 308, 389
Bst6I CTCTTC 2 cut(s) 134, 136
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 178
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 2 cut(s) 278, 377
BstKTI GATC 2 cut(s) 264, 363
BstMBI GATC 2 cut(s) 261, 360
BstMCI CGRYCG 2 cut(s) 264, 363
BstNSI RCATGY 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 5 cut(s) 130, 269, 342, 368, 441
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 2 cut(s) 278, 377
BtsIMutI CAGTG 7 cut(s) 21, 204, 232, 245, 315, 344, 414
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 450
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 2 cut(s) 173, 179
CviJI RGCY 7 cut(s) 89, 102, 121, 183, 333, 408, 432
CviKI_1 RGCY 7 cut(s) 89, 102, 121, 183, 333, 408, 432
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 263, 362
DpnII GATC 2 cut(s) 261, 360
Eam1104I CTCTTC 2 cut(s) 134, 136
EarI CTCTTC 2 cut(s) 134, 136
EciI GGCGGA 2 cut(s) 301, 400
Eco130I CCWWGG 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 176, 182
FaiI YATR 5 cut(s) 31, 46, 174, 180, 214
FaqI GGGAC 2 cut(s) 138, 200
FatI CATG 2 cut(s) 172, 178
Fnu4HI GCNGC 5 cut(s) 119, 258, 331, 357, 430
FokI GGATG 2 cut(s) 285, 384
Fsp4HI GCNGC 5 cut(s) 119, 258, 331, 357, 430
FspBI CTAG 1 cut(s) 12
GluI GCNGC 5 cut(s) 119, 258, 331, 357, 430
GsaI CCCAGC 2 cut(s) 125, 187
GsuI CTGGAG 2 cut(s) 269, 368
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 176, 182
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 3 cut(s) 15, 217, 222
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 4 cut(s) 230, 295, 342, 394
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 12, 235
Hpy8I GTNNAC 4 cut(s) 230, 295, 342, 394
HpyCH4III ACNGT 5 cut(s) 25, 155, 290, 308, 389
HpyCH4V TGCA 5 cut(s) 29, 118, 162, 276, 375
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 176, 182
Kzo9I GATC 2 cut(s) 261, 360
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 9 cut(s) 99, 103, 107, 169, 210, 233, 303, 332, 402
Lsp1109I GCAGC 5 cut(s) 130, 269, 342, 368, 441
LweI GCATC 2 cut(s) 263, 362
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 263, 362
MboI GATC 2 cut(s) 261, 360
MboII GAAGA 3 cut(s) 26, 123, 151
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 6 cut(s) 49, 61, 135, 195, 244, 343
MseI TTAA 1 cut(s) 460
MslI CAYNNNNRTG 3 cut(s) 177, 320, 419
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 4 cut(s) 285, 327, 384, 426
NciI CCSGG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 178
NdeII GATC 2 cut(s) 261, 360
NlaIII CATG 2 cut(s) 176, 182
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 149
NspI RCATGY 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 136
PctI GAATGC 4 cut(s) 285, 327, 384, 426
PfeI GAWTC 2 cut(s) 15, 222
PkrI GCNGC 5 cut(s) 120, 259, 332, 358, 431
Ple19I CGATCG 2 cut(s) 264, 363
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 2 cut(s) 121, 183
PspN4I GGNNCC 1 cut(s) 206
PvuI CGATCG 2 cut(s) 264, 363
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 3 cut(s) 177, 320, 419
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 5 cut(s) 119, 258, 331, 357, 430
Sau3AI GATC 2 cut(s) 261, 360
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 91
SfaNI GCATC 2 cut(s) 263, 362
SmiMI CAYNNNNRTG 3 cut(s) 177, 320, 419
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SsiI CCGC 3 cut(s) 19, 312, 411
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 5 cut(s) 25, 155, 290, 308, 389
TaqI TCGA 1 cut(s) 220
TfiI GAWTC 2 cut(s) 15, 222
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 7 cut(s) 28, 204, 232, 252, 322, 351, 421
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 5 cut(s) 118, 257, 330, 356, 429
Tsp45I GTSAC 1 cut(s) 149
TspRI CASTG 7 cut(s) 28, 204, 232, 252, 322, 351, 421
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.