Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002853.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70092 .. 70990

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002853.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgggttactttgatcatcagttgcacctaggggtggacgtccggactttcaaaacaaaaagccagacccgaaaaaccgaaaaaagcccaattcagttcgggtttgatatagaaattcttgatccagtgatctgggcacctattcacccaagtcctccgggtcaacccaacacgcagttccacgatcaagatgacaagatcgagtccgtcgtcgtcgaattgcagaaggaagcgaagctaatcgtgaaggtctccaagctccgatcttggagctatttctggctggacgagtacacagagaagcttctggaattggatagaatgtttgatgcttataagaaggcggtggaggctgaaacggtgccgttgagaacagagacggcggaggcggtggtgcaggaggaaagggggactggtgaagaggaagaggcggcgctggttgtgaagaagaatatatgtatagaattgcagaagaagaagaataagaagtgtcgaagaagagtagaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

19.82

Weight (kDa)

5.9

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AatII	GACGTC	1 cut(s)	42
AccB1I	GGYRCC	2 cut(s)	136, 361
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	4 cut(s)	344, 383, 389, 431
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	4 cut(s)	238, 259, 273, 304
AluI	AGCT	4 cut(s)	238, 259, 273, 304
Alw26I	GTCTC	2 cut(s)	256, 371
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	114
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	137, 428
AvrII	CCTAGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	136, 361
BceAI	ACGGC	2 cut(s)	349, 396
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	256, 371
BfaI	CTAG	2 cut(s)	29, 511
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	1 cut(s)	432
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	138, 363
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	125, 418
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	125, 418
BseSI	GKGCMC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	136, 361
BsiSI	CCGG	2 cut(s)	43, 158
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	256, 371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	424
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
BspACI	CCGC	4 cut(s)	344, 383, 389, 431
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	138, 363
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	136, 361
BspTNI	GGTCTC	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	125, 418
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	3 cut(s)	414, 420, 493
BstACI	GRCGYC	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	6 cut(s)	16, 124, 132, 187, 201, 266
BstMAI	GTCTC	2 cut(s)	256, 371
BstMBI	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	8 cut(s)	63, 87, 238, 259, 273, 283, 304, 353
CviKI_1	RGCY	8 cut(s)	63, 87, 238, 259, 273, 283, 304, 353
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	6 cut(s)	15, 123, 131, 186, 200, 265
DpnII	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
Eam1104I	CTCTTC	3 cut(s)	414, 420, 493
EarI	CTCTTC	3 cut(s)	414, 420, 493
EciI	GGCGGA	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	371
FaiI	YATR	5 cut(s)	110, 336, 455, 457, 461
FaqI	GGGAC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	29, 511
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	437
HapII	CCGG	2 cut(s)	43, 158
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	43, 158
HphI	GGTGA	2 cut(s)	137, 428
Hpy166II	GTNNAC	3 cut(s)	37, 164, 294
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	5 cut(s)	43, 119, 188, 244, 308
Hpy8I	GTNNAC	3 cut(s)	37, 164, 294
Hpy99I	CGWCG	3 cut(s)	212, 215, 218
HpyAV	CCTTC	3 cut(s)	220, 241, 334
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	25, 223, 397, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	1 cut(s)	434
Kpn2I	TCCGGA	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
LmnI	GCTCC	2 cut(s)	264, 270
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	29, 511
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	6 cut(s)	15, 123, 131, 186, 200, 265
MboI	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
MboII	GAAGA	9 cut(s)	431, 437, 457, 460, 484, 487, 490, 507, 510
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	5 cut(s)	90, 114, 218, 311, 464
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	165, 343, 379, 394, 415, 421
MroI	TCCGGA	1 cut(s)	42
MspI	CCGG	2 cut(s)	43, 158
MspR9I	CCNGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
NlaIV	GGNNCC	2 cut(s)	138, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	138, 363
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	6 cut(s)	13, 121, 129, 184, 198, 263
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	30, 42, 142, 240, 252, 261, 275, 306
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	5 cut(s)	90, 114, 218, 311, 464
SsiI	CCGC	4 cut(s)	344, 383, 389, 431
SspMI	CTAG	2 cut(s)	29, 511
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	201, 216, 493
TasI	AATT	5 cut(s)	90, 114, 218, 311, 464
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	434
TscAI	CASTG	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	114
XmaJI	CCTAGG	1 cut(s)	28
XspI	CTAG	2 cut(s)	29, 511
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.