Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22070 .. 22932

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggaatatgcttccaaggatcatgaaagtgcggctgaatttgtgaaaggaaagcaagtaacagttgttgggtttcagaaatctgcattggacattgcaatggagtgctcaaatgcaaatggggtagaacatccgtgtacagtgttgtacaggacagaacactggaatcttccttccggtcgtgtgcctttcgcacacctatacctcaatcgcttctcggagcttttgcttcataagcctggtgaaggcctcctactcagtctccttgcaacacttctttcacctctgagatgggcattttcaaaatttgttgaaagctacatagataagaagcttggattatccaagtatggaatggtacctaagcatagtttccttcaagaaatcagttcctgtctgatctcaaccgtgcctgaaaaattctatgaccgagtccaagaaggaagcattttacttaagaaatctcccaaaagcttcagcttttgccgagaaggcattttggttgaaggagaaaactcccctgtaaagacagatttggtcatattggctactggatttagaggtgatgagaagcttaaagacacctttgtgtcaccaacatttcaagactacatagctggatcacctaagtccattttacctctctacaggttagttaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

220

Amino Acids

24.65

Weight (kDa)

8.26

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	27, 628
AcsI	RAATTY	3 cut(s)	38, 305, 419
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	3 cut(s)	139, 149, 360
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	303, 314, 380, 506, 605
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	7 cut(s)	223, 318, 334, 474, 480, 574, 617
AluI	AGCT	7 cut(s)	223, 318, 334, 474, 480, 574, 617
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	27, 628
AlwNI	CAGNNNCTG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	38, 305, 419
Asp718I	GGTACC	1 cut(s)	358
AsuHPI	GGTGA	5 cut(s)	254, 273, 575, 585, 615
BanI	GGYRCC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	646
BfrI	CTTAAG	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	167, 556
Bse3DI	GCAATG	2 cut(s)	93, 105
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	2 cut(s)	93, 105
BseMII	CTCAG	2 cut(s)	271, 278
BseNI	ACTGG	2 cut(s)	167, 556
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp1407I	TGTACA	2 cut(s)	137, 147
Bsp143I	GATC	3 cut(s)	19, 399, 620
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	270, 279
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	2 cut(s)	27, 628
BspT107I	GGYRCC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	93, 105
BsrGI	TGTACA	2 cut(s)	137, 147
BsrI	ACTGG	2 cut(s)	167, 556
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	19, 399, 620
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	64, 142, 409
BstAFI	CTTAAG	1 cut(s)	455
BstAUI	TGTACA	2 cut(s)	137, 147
BstDEI	CTNAG	4 cut(s)	257, 287, 363, 627
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	22, 402, 623
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	19, 399, 620
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 492
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	646
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	147, 160
CaiI	CAGNNNCTG	1 cut(s)	393
CciI	TCATGA	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	138, 148, 359
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	3 cut(s)	138, 148, 359
DdeI	CTNAG	4 cut(s)	257, 287, 363, 627
DpnI	GATC	3 cut(s)	21, 401, 622
DpnII	GATC	3 cut(s)	19, 399, 620
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	26
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	1 cut(s)	26
HindIII	AAGCTT	3 cut(s)	332, 472, 572
HinfI	GANTC	2 cut(s)	166, 432
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	5 cut(s)	254, 273, 575, 585, 615
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	4 cut(s)	78, 220, 288, 399
Hpy188III	TCNNGA	3 cut(s)	23, 380, 605
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	6 cut(s)	183, 239, 386, 434, 485, 500
HpyCH4III	ACNGT	3 cut(s)	64, 142, 409
HpyCH4V	TGCA	4 cut(s)	86, 98, 116, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 492
HpyF3I	CTNAG	4 cut(s)	257, 287, 363, 627
Hsp92II	CATG	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	19, 399, 620
LmnI	GCTCC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	58, 591
MalI	GATC	3 cut(s)	21, 401, 622
MboI	GATC	3 cut(s)	19, 399, 620
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	4 cut(s)	38, 305, 419, 658
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	215, 260, 294, 554, 651
MseI	TTAA	3 cut(s)	456, 576, 657
MslI	CAYNNNNRTG	3 cut(s)	27, 98, 587
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	235, 492
NdeII	GATC	3 cut(s)	19, 399, 620
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	591
OliI	CACNNNNGTG	1 cut(s)	587
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	3 cut(s)	139, 149, 360
RsaNI	GTAC	3 cut(s)	138, 148, 359
RseI	CAYNNNNRTG	3 cut(s)	27, 98, 587
SaqAI	TTAA	3 cut(s)	456, 576, 657
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	19, 399, 620
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	3 cut(s)	27, 98, 587
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	38, 305, 419, 658
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	64, 142, 409
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	4 cut(s)	38, 305, 419, 658
TatI	WGTACW	2 cut(s)	137, 147
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	456, 576, 657
Tru9I	TTAA	3 cut(s)	456, 576, 657
TscAI	CASTG	2 cut(s)	147, 167
TseFI	GTSAC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	2 cut(s)	39, 221
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	147, 167
Tth111I	GACNNNGTC	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	3 cut(s)	38, 305, 419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.