Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

68717 .. 69019

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atggactatgctgctatggattatgaaagcgctgctaagtttgtgacaggaaagcaagtaacagtcgtcgggtttcagaaatttgcaatggagtgttcaaacgcgaatggggttgaaaatccatgcacagtgttgtacaagacagaacactggaatgttcccgactatcatccatggggtgtgccactggcgtacctatacagtcaaataagatactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

73

Amino Acids

8.41

Weight (kDa)

5.45

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	2 cut(s)	137, 194
AfeI	AGCGCT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	99, 116
Aor51HI	AGCGCT	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	11, 32
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	32
BaeI	ACNNNNGTAYC	2 cut(s)	176, 209
BbvI	GCAGC	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	2 cut(s)	12, 33
BlsI	GCNGC	2 cut(s)	13, 34
BsaJI	CCNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	155, 192
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	155, 192
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	155, 192
BssECI	CCNNGG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	64, 130, 203
BstAUI	TGTACA	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	135, 148, 185
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	136, 193
CviAII	CATG	2 cut(s)	123, 174
CviQI	GTAC	2 cut(s)	136, 193
DdeI	CTNAG	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	126, 177
FaiI	YATR	6 cut(s)	9, 17, 24, 124, 175, 199
FatI	CATG	2 cut(s)	122, 173
Fnu4HI	GCNGC	2 cut(s)	12, 33
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	12, 33
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	12, 33
HaeII	RGCGCY	1 cut(s)	33
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	126, 177
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	3 cut(s)	64, 130, 203
HpyCH4V	TGCA	2 cut(s)	86, 126
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	126, 177
HspAI	GCGC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	33, 136, 173
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	43, 58
MluCI	AATT	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	173
NlaIII	CATG	2 cut(s)	126, 177
NmuCI	GTSAC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	13, 34
RsaI	GTAC	2 cut(s)	137, 194
RsaNI	GTAC	2 cut(s)	136, 193
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	2 cut(s)	12, 33
SetI	ASST	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	3 cut(s)	64, 130, 203
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	135
TscAI	CASTG	3 cut(s)	135, 155, 192
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	11, 32
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	3 cut(s)	135, 155, 192
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.