Rmu_sc0002881.1_g000002

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002881.1
N/A
Physical Location & Seq
Forward (+)
5425 .. 5995
571 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgtcatcagaggcagaagggacccaggtagaattggattctgctgattttgtttctgatgctaatctgagtccttttccctggttatgtgaccagttcctaaagaatcctaaatccaacatggtagtcccttttcctgatgtaaccaagtgtattctgccgttggaagataagaaccggttgagttgtaaccaaatatattctaggaagagaactggtagtttaaagaggagattgggaacaccacagatgcaactccaagtactacaagctaaggaagatatcagtatggtcgtgcttataacagatcatgaagtgatctctaaagcttttttgatacttgggaacgcttggtgcggccgagtaatcttttggagctttgatagtgtggaaagcaaggtagttgaaagaatggcatatattgtagttgtaagaactaagaagtctattgggaacaatgcagatgggctccaagtactacaagatcagggaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

6.58

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AciI CCGC 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 358
AfaI GTAC 2 cut(s) 264, 477
AgeI ACCGGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 2 cut(s) 24, 80
AluBI AGCT 3 cut(s) 272, 329, 378
AluI AGCT 3 cut(s) 272, 329, 378
AoxI GGCC 1 cut(s) 358
AsiGI ACCGGT 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 471
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 26, 82
BfaI CTAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
BmcAI AGTACT 2 cut(s) 264, 477
Bme1390I CCNGG 2 cut(s) 26, 82
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 3 cut(s) 22, 23, 470
BmrFI CCNGG 2 cut(s) 26, 82
BmsI GCATC 2 cut(s) 49, 240
Bpu10I CCTNAGC 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 24, 80
BsaWI WCCGGW 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 94, 220
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 26, 82
BseDI CCNNGG 2 cut(s) 24, 80
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 94, 220
BseRI GAGGAG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 360
BshTI ACCGGT 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 361
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 2 cut(s) 34, 113
BsmFI GGGAC 2 cut(s) 34, 113
BsnI GGCC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 3 cut(s) 307, 318, 484
BspACI CCGC 1 cut(s) 357
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 22, 23, 470
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 2 cut(s) 94, 220
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 24, 80
BssMI GATC 3 cut(s) 307, 318, 484
Bst2UI CCWGG 2 cut(s) 26, 82
Bst6I CTCTTC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 68, 273, 438
BstKTI GATC 3 cut(s) 310, 321, 487
BstMBI GATC 3 cut(s) 307, 318, 484
BstMCI CGRYCG 1 cut(s) 361
BstNI CCWGG 2 cut(s) 26, 82
BstSCI CCNGG 2 cut(s) 24, 80
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 1 cut(s) 360
CciI TCATGA 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 263, 476
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 2 cut(s) 121, 311
CviJI RGCY 5 cut(s) 272, 329, 360, 378, 469
CviKI_1 RGCY 5 cut(s) 272, 329, 360, 378, 469
CviQI GTAC 2 cut(s) 263, 476
DdeI CTNAG 3 cut(s) 68, 273, 438
DpnI GATC 3 cut(s) 309, 320, 486
DpnII GATC 3 cut(s) 307, 318, 484
DraI TTTAAA 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 358
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EclXI CGGCCG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 471
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 24, 80
EcoRV GATATC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 2 cut(s) 124, 314
FaiI YATR 8 cut(s) 88, 122, 199, 290, 302, 312, 418, 420
FaqI GGGAC 2 cut(s) 34, 113
FatI CATG 2 cut(s) 120, 310
Fnu4HI GCNGC 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 178
Hin1II CATG 2 cut(s) 124, 314
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 3 cut(s) 38, 70, 106
HpaII CCGG 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 10, 58, 69
Hpy188III TCNNGA 2 cut(s) 137, 311
HpyAV CCTTC 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 253, 461
HpyF3I CTNAG 3 cut(s) 68, 273, 438
Hsp92II CATG 2 cut(s) 124, 314
KflI GGGWCCC 1 cut(s) 21
Kzo9I GATC 3 cut(s) 307, 318, 484
LmnI GCTCC 2 cut(s) 375, 474
LpnPI CCDG 9 cut(s) 11, 38, 67, 94, 107, 150, 191, 201, 473
LweI GCATC 2 cut(s) 49, 240
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 89, 142, 188
MalI GATC 3 cut(s) 309, 320, 486
MboI GATC 3 cut(s) 307, 318, 484
MboII GAAGA 3 cut(s) 179, 220, 290
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 1 cut(s) 32
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 2 cut(s) 141, 144
MnlI CCTC 3 cut(s) 4, 222, 485
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 26, 82
MvaI CCWGG 2 cut(s) 26, 82
NdeII GATC 3 cut(s) 307, 318, 484
NlaIII CATG 2 cut(s) 124, 314
NlaIV GGNNCC 3 cut(s) 22, 23, 470
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 2 cut(s) 38, 106
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 21
PsiI TTATAA 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 24, 80
PspGI CCWGG 2 cut(s) 24, 80
PspN4I GGNNCC 3 cut(s) 22, 23, 470
PspPI GGNCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 21
RsaI GTAC 2 cut(s) 264, 477
RsaNI GTAC 2 cut(s) 263, 476
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 3 cut(s) 307, 318, 484
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 2 cut(s) 264, 477
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 26, 82
SduI GDGCHC 1 cut(s) 471
SetI ASST 5 cut(s) 30, 274, 331, 380, 402
SfaNI GCATC 2 cut(s) 49, 240
SinI GGWCC 1 cut(s) 21
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 357
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 24, 80
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 262, 475
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 2 cut(s) 38, 106
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 21
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 2 cut(s) 264, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.