Rmu_sc0002886.1_g000010

Wall-associated receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002886.1
N/A
Physical Location & Seq
Reverse (-)
41132 .. 42039
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002886.1_g000010.1.cds

Sequence Viewer

Length: 603 bp
atggaggccaatgtactgtttacaaagaccgaaattctcctcttggtctatgaatttctaccgaacggaacactttctcagtacattcatgaccaagatgaggagtttcctctcacatggggaacgcgattgcgagtgtctaccgaagttgctagagctctttcatatttacactcggcagcttctattcctatttaccaccgggacatcaagtccacgaacatactcttggatgccaagtatagagcaaaaattgcagattttgggatttcaagatccatatccattgaccagacacatctcaccacacaagtacatggaacatttggttatttggacccagagtgctttcaatcaagccaatttacagaaaagagtgatgtttacagcttcggtgtggtccttgctgagctcttgactggacaaaaaccagttatttccatgatgaggaaacgtcctactatgaaagaagtagcggcggaattggagggagttcgattggcagtcaaagatgctgatcatgttcaacaaaatttggtagaggaaggagatgtcgaaactcatgaaataaccattgaagagttcatcaataagaagcagtag

Protein Analysis

200

Amino Acids

22.71

Weight (kDa)

5.25

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AccII CGCG 1 cut(s) 127
AciI CCGC 2 cut(s) 476, 479
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 3 cut(s) 33, 53, 532
AfaI GTAC 3 cut(s) 15, 83, 315
AfiI CCNNNNNNNGG 2 cut(s) 100, 447
AgsI TTSAA 4 cut(s) 273, 353, 527, 578
AhdI GACNNNNNGTC 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 158, 182, 390, 412
AluI AGCT 4 cut(s) 158, 182, 390, 412
Alw21I GWGCWC 2 cut(s) 160, 414
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 3 cut(s) 33, 53, 532
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 337, 400
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 2 cut(s) 337, 400
BanII GRGCYC 2 cut(s) 160, 414
Bbv12I GWGCWC 2 cut(s) 160, 414
BbvI GCAGC 1 cut(s) 191
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 180, 477
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 2 cut(s) 181, 478
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 337, 400
BmeRI GACNNNNNGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 337, 400
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 223, 502
Bpu1102I GCTNAGC 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 203
BsaBI GATNNNNATC 2 cut(s) 280, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 447
Bse1I ACTGG 2 cut(s) 424, 431
Bse8I GATNNNNATC 2 cut(s) 280, 516
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 2 cut(s) 280, 516
BseLI CCNNNNNNNGG 2 cut(s) 100, 447
BseMII CTCAG 2 cut(s) 92, 399
BseNI ACTGG 2 cut(s) 424, 431
BseRI GAGGAG 2 cut(s) 29, 116
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 160, 414
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 100, 447
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 160, 414
Bsp143I GATC 2 cut(s) 275, 517
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 2 cut(s) 476, 479
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 91, 400
BspFNI CGCG 1 cut(s) 127
BspHI TCATGA 2 cut(s) 88, 562
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 424, 431
BssMI GATC 2 cut(s) 275, 517
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 78, 408
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 2 cut(s) 278, 520
BstMBI GATC 2 cut(s) 275, 517
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 238
CciI TCATGA 2 cut(s) 88, 562
Cfr13I GGNCC 2 cut(s) 337, 400
Csp6I GTAC 3 cut(s) 14, 82, 314
CviAII CATG 6 cut(s) 89, 117, 317, 442, 521, 563
CviJI RGCY 6 cut(s) 8, 158, 182, 360, 390, 412
CviKI_1 RGCY 6 cut(s) 8, 158, 182, 360, 390, 412
CviQI GTAC 3 cut(s) 14, 82, 314
DdeI CTNAG 2 cut(s) 78, 408
DpnI GATC 2 cut(s) 277, 519
DpnII GATC 2 cut(s) 275, 517
DriI GACNNNNNGTC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 573
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 1 cut(s) 494
Ecl136II GAGCTC 2 cut(s) 158, 412
Eco24I GRGCYC 2 cut(s) 160, 414
Eco47I GGWCC 2 cut(s) 337, 400
Eco53kI GAGCTC 2 cut(s) 158, 412
EcoICRI GAGCTC 2 cut(s) 158, 412
EcoT38I GRGCYC 2 cut(s) 160, 414
FaeI CATG 6 cut(s) 92, 120, 320, 445, 524, 566
FaqI GGGAC 1 cut(s) 218
FatI CATG 6 cut(s) 88, 116, 316, 441, 520, 562
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 180, 477
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 2 cut(s) 160, 414
Fsp4HI GCNGC 2 cut(s) 180, 477
FspBI CTAG 1 cut(s) 153
GluI GCNGC 2 cut(s) 180, 477
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 202
Hin1II CATG 6 cut(s) 92, 120, 320, 445, 524, 566
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 4 cut(s) 21, 141, 216, 385
Hpy188III TCNNGA 4 cut(s) 89, 273, 415, 563
Hpy8I GTNNAC 4 cut(s) 21, 141, 216, 385
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 78, 408
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 6 cut(s) 92, 120, 320, 445, 524, 566
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 275, 517
LpnPI CCDG 5 cut(s) 215, 305, 354, 405, 444
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 223, 502
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 454
MalI GATC 2 cut(s) 277, 519
MboI GATC 2 cut(s) 275, 517
MboII GAAGA 1 cut(s) 590
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 160, 414
MluCI AATT 6 cut(s) 33, 53, 252, 362, 482, 532
MnlI CCTC 6 cut(s) 50, 94, 120, 441, 481, 535
MroXI GAANNNNTTC 1 cut(s) 73
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 275, 517
NlaIII CATG 6 cut(s) 92, 120, 320, 445, 524, 566
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 155
PagI TCATGA 2 cut(s) 88, 562
PdmI GAANNNNTTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 181, 478
Psp124BI GAGCTC 2 cut(s) 160, 414
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 337, 400
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 3 cut(s) 15, 83, 315
RsaNI GTAC 3 cut(s) 14, 82, 314
SacI GAGCTC 2 cut(s) 160, 414
SatI GCNGC 2 cut(s) 180, 477
Sau3AI GATC 2 cut(s) 275, 517
Sau96I GGNCC 2 cut(s) 337, 400
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 160, 414
SetI ASST 5 cut(s) 160, 184, 392, 414, 457
SfaNI GCATC 2 cut(s) 223, 502
SinI GGWCC 2 cut(s) 337, 400
Sse9I AATT 6 cut(s) 33, 53, 252, 362, 482, 532
SsiI CCGC 2 cut(s) 476, 479
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 2 cut(s) 160, 414
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 457
TaqI TCGA 2 cut(s) 496, 555
TaqII GACCGA 1 cut(s) 44
TasI AATT 6 cut(s) 33, 53, 252, 362, 482, 532
TatI WGTACW 3 cut(s) 13, 81, 313
TauI GCSGC 1 cut(s) 479
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 6 cut(s) 66, 77, 153, 479, 574, 579
TspGWI ACGGA 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 337, 400
XapI RAATTY 3 cut(s) 33, 53, 532
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.