Rmu_sc0002893.1_g000025

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002893.1
N/A
Physical Location & Seq
Forward (+)
103783 .. 104202
420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
atgctggataggattcttgagccttgccaggatgtgctaactgttgagcaagctcaagctttggaagaaaatagagcagccttggaggcaaataaggcgaaagccatcatcctaaagactcgacatatgaatgatttgctccagtacgggtatatgaatgaagaagactccaaaaggctgtgggtctcagtcgaagcacattttggcaacttccgtgactccctgcttcctgacctagaagtgagatggcataatctccgcttatgtgattttaagacagttcttgattacaactcggaagcacttcgcattaaatccttaatggaattctgtggaaaagatatcacagatgcgatgttgattgagaggactctctctaacatccccgtctctactttgatggttgctaagaactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

16.12

Weight (kDa)

5.21

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 2 cut(s) 53, 59
AluI AGCT 2 cut(s) 53, 59
Alw26I GTCTC 2 cut(s) 190, 394
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 89
BccI CCATC 3 cut(s) 113, 240, 394
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 190, 394
BfaI CTAG 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 38, 39
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 37, 108, 381
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 190, 394
BsmBI CGTCTC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 190
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 43, 280
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 187, 408
BstF5I GGATG 3 cut(s) 37, 108, 381
BstMAI GTCTC 2 cut(s) 190, 394
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 3 cut(s) 37, 108, 381
Cac8I GCNNGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 6 cut(s) 22, 53, 59, 80, 104, 178
CviKI_1 RGCY 6 cut(s) 22, 53, 59, 80, 104, 178
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 187, 408
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 394
FaiI YATR 6 cut(s) 126, 128, 153, 155, 252, 265
FauNDI CATATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 3 cut(s) 44, 95, 368
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 236
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 5 cut(s) 13, 118, 167, 218, 370
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 3 cut(s) 17, 230, 284
HpyCH4III ACNGT 2 cut(s) 43, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 2 cut(s) 187, 408
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 14, 41, 155, 236, 243
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 3 cut(s) 77, 173, 176
MluCI AATT 1 cut(s) 326
MlyI GAGTC 4 cut(s) 112, 161, 212, 364
MnlI CCTC 2 cut(s) 79, 360
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 4 cut(s) 273, 312, 320, 418
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeI CATATG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 4 cut(s) 112, 161, 212, 364
PpsI GAGTC 4 cut(s) 112, 161, 212, 364
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 4 cut(s) 273, 312, 320, 418
SatI GCNGC 1 cut(s) 78
SchI GAGTC 4 cut(s) 112, 161, 212, 364
ScrFI CCNGG 1 cut(s) 29
SetI ASST 3 cut(s) 55, 61, 237
SfaNI GCATC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 17, 54
SmoI CTYRAG 2 cut(s) 17, 54
Sse9I AATT 1 cut(s) 326
SsiI CCGC 1 cut(s) 259
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 43, 280
TaqI TCGA 2 cut(s) 121, 192
TasI AATT 1 cut(s) 326
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 4 cut(s) 273, 312, 320, 418
Tru9I TTAA 4 cut(s) 273, 312, 320, 418
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 3 cut(s) 143, 170, 174
TspGWI ACGGA 1 cut(s) 203
XapI RAATTY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.