Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

121057 .. 121482

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaccagatttcaaccatgtccaaactcctatcctcctcattcttcttcctcctcttcactctctttgccgccttctctctctcctccgctgagatccacaccttgtcggtccgcgacaactggcgtccaatcatcaccttcgatgaattcagcttcacacacaaaggtcaccttgagctcaacgtctccaagatcgccctctcccagcaactgcctagatcacgatcttgctcgagtcggcttcttcctctgcatcggggactcatggatccacttattccagcagctcgaggagggcgagatcggctgcgccctcctctccaatctcatcaagcgtgtctacaccttcgaccaactcaaagacggcgacagcttctctagcgtgttctccgagaccgacatcaatcagtacacgtgtcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

141

Amino Acids

15.36

Weight (kDa)

6.38

Isoelectric Point (pI)

70.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	51 - 138	3.2e-07	CAND6/7, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	71, 89, 114
AclWI	GGATC	3 cut(s)	90, 265, 278
AcsI	RAATTY	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	413
AflIII	ACRYGT	2 cut(s)	414, 416
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	155, 180, 289, 375
AluI	AGCT	4 cut(s)	155, 180, 289, 375
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	192, 389
AlwI	GGATC	3 cut(s)	90, 265, 278
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	2 cut(s)	234, 290
ApeKI	GCWGC	2 cut(s)	286, 309
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	129, 163
AvaI	CYCGRG	2 cut(s)	234, 290
AvaII	GGWCC	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	182
BbrPI	CACGTG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	296, 298
BceAI	ACGGC	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	192, 389
BfaI	CTAG	2 cut(s)	218, 381
BisI	GCNGC	3 cut(s)	71, 287, 310
BlsI	GCNGC	3 cut(s)	72, 288, 311
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	2 cut(s)	234, 290
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	5 cut(s)	27, 43, 75, 308, 308
BseXI	GCAGC	2 cut(s)	296, 298
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	2 cut(s)	234, 290
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	192, 389
BsmBI	CGTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	2 cut(s)	234, 290
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
BspACI	CCGC	3 cut(s)	71, 89, 114
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	3 cut(s)	90, 265, 278
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
BssNI	GRCGYC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	6 cut(s)	98, 197, 223, 229, 273, 306
BstMAI	GTCTC	2 cut(s)	192, 389
BstMBI	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 381
BstPI	GGTNACC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	296, 298
BstX2I	RGATCY	2 cut(s)	95, 270
BstYI	RGATCY	2 cut(s)	95, 270
CaiI	CAGNNNCTG	1 cut(s)	213
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	111
CpoI	CGGWCCG	1 cut(s)	111
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	412
CspI	CGGWCCG	1 cut(s)	111
CviAII	CATG	2 cut(s)	18, 267
CviJI	RGCY	6 cut(s)	155, 180, 243, 289, 309, 375
CviKI_1	RGCY	6 cut(s)	155, 180, 243, 289, 309, 375
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	6 cut(s)	97, 196, 222, 228, 272, 305
DpnII	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	234, 290
Eco91I	GGTNACC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	2 cut(s)	21, 270
FaiI	YATR	2 cut(s)	19, 268
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	17, 266
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	71, 287, 310
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	71, 287, 310
FspBI	CTAG	2 cut(s)	218, 381
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	3 cut(s)	71, 287, 310
GsaI	CCCAGC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	21, 270
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	237, 263
HphI	GGTGA	2 cut(s)	129, 163
Hpy166II	GTNNAC	2 cut(s)	343, 414
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	343, 414
HpyAV	CCTTC	3 cut(s)	84, 150, 358
HpyCH4IV	ACGT	2 cut(s)	185, 416
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 381
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	185, 416
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	21, 270
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
LpnPI	CCDG	4 cut(s)	19, 108, 220, 296
Lsp1109I	GCAGC	2 cut(s)	296, 298
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	218, 381
MaeII	ACGT	2 cut(s)	185, 416
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	6 cut(s)	97, 196, 222, 228, 272, 305
MboI	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
MboII	GAAGA	4 cut(s)	36, 39, 48, 238
MflI	RGATCY	2 cut(s)	95, 270
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	246, 257
MspA1I	CMGCKG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	306, 381
NdeII	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
NlaIII	CATG	2 cut(s)	21, 270
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	169
PaeR7I	CTCGAG	2 cut(s)	234, 290
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	72, 288, 311
PleI	GAGTC	2 cut(s)	245, 257
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	2 cut(s)	245, 257
Ppu21I	YACGTR	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	182
PspCI	CACGTG	1 cut(s)	417
PspEI	GGTNACC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	111
PspXI	VCTCGAGB	2 cut(s)	234, 290
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	95, 270
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
Rsr2I	CGGWCCG	1 cut(s)	111
RsrII	CGGWCCG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	182
SatI	GCNGC	3 cut(s)	71, 287, 310
Sau3AI	GATC	6 cut(s)	95, 194, 220, 226, 270, 303
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	246, 257
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	264
Sfr274I	CTCGAG	2 cut(s)	234, 290
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	2 cut(s)	234, 290
SmlI	CTYRAG	3 cut(s)	175, 234, 290
SmoI	CTYRAG	3 cut(s)	175, 234, 290
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	3 cut(s)	71, 89, 114
SspMI	CTAG	2 cut(s)	218, 381
SstI	GAGCTC	1 cut(s)	182
TaiI	ACGT	2 cut(s)	188, 419
TaqI	TCGA	4 cut(s)	143, 235, 291, 351
TaqII	GACCGA	2 cut(s)	99, 413
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	286, 309
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	148
XhoI	CTCGAG	2 cut(s)	234, 290
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	218, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.