Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

230825 .. 232029

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggctgcagcgatcgcatccatgactgccagacttgctaccaagttgttgctcaaggaaggagaagaaccggtggatttagggaatcttaaggtttcggggaaggagtttttggcttgcaatttctatttggtaaagaggcttaacacttgcagggcagtggtactggattcgttccggagtgctgtgagatctatggatgttgctcgtgtgaagaagggaggcccatggggttttcagcgagccatgcttttcctgaatgattatgacggtttctcggagatttcttctgtgaagttggactttgtttggatatgggttacgttggagggcatacctccggacatattgactaaacccactgtctggttgttggtgggacaattagtgaggttctggaggtggatcgcatggtgttgcgtaggggagatgcacgggttaggcttgttctctctatcaatgatccgggtggatgactcggaggctgactctgcggtggagataggatgtagccggcaacaggagctggtgtcctccgggactgagggtacctttgctcaagctcaggtggtggggatgcatcgtcccaaagatgaggacggtaaacgggccaaacatagtttggctctggttccggtcaccttgcagccggaacaacttggcctcgagctttctgctacaggtttggtagatgcgaagatgcctcaggcggtttacaagaagaagggaaggcctcgtggctcgagaaacaaggtcaaagcggcacaggcggagtctacctgtgtcggctctgagtccatggcgtccatgaaggcggggtcccttgatggtggaggtgatggtgtgcatgggatgcaagttgggctggcctctttagagcccgtctcccagtctgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

299

Amino Acids

32.33

Weight (kDa)

8.48

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	776
AccIII	TCCGGA	2 cut(s)	177, 340
AciI	CCGC	5 cut(s)	494, 710, 761, 770, 815
AclWI	GGATC	2 cut(s)	413, 457
AcyI	GRCGYC	1 cut(s)	803
AfaI	GTAC	2 cut(s)	165, 550
AfiI	CCNNNNNNNGG	3 cut(s)	366, 520, 894
AflII	CTTAAG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	526, 563, 670
AluI	AGCT	3 cut(s)	526, 563, 670
Alw26I	GTCTC	1 cut(s)	889
AlwI	GGATC	2 cut(s)	413, 457
AlwNI	CAGNNNCTG	1 cut(s)	526
Ama87I	CYCGRG	2 cut(s)	665, 742
Aor13HI	TCCGGA	2 cut(s)	177, 340
AoxI	GGCC	5 cut(s)	223, 609, 661, 731, 867
ApeKI	GCWGC	3 cut(s)	5, 8, 646
AsiGI	ACCGGT	1 cut(s)	70
AsiSI	GCGATCGC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	224, 609, 819
AsuC2I	CCSGG	2 cut(s)	467, 538
AsuHPI	GGTGA	2 cut(s)	631, 848
AvaI	CYCGRG	2 cut(s)	665, 742
AvaII	GGWCC	1 cut(s)	819
AxyI	CCTNAGG	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	882
BauI	CACGAG	2 cut(s)	207, 735
BbvI	GCAGC	2 cut(s)	20, 658
BccI	CCATC	2 cut(s)	821, 833
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BcnI	CCSGG	2 cut(s)	467, 538
BcoDI	GTCTC	1 cut(s)	889
BfmI	CTRYAG	2 cut(s)	6, 678
BfrI	CTTAAG	1 cut(s)	89
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	4 cut(s)	6, 9, 647, 762
BlsI	GCNGC	4 cut(s)	7, 10, 648, 763
Bme1390I	CCNGG	2 cut(s)	467, 538
Bme18I	GGWCC	1 cut(s)	819
BmeT110I	CYCGRG	2 cut(s)	665, 742
BmgT120I	GGNCC	3 cut(s)	224, 609, 819
BmiI	GGNNCC	4 cut(s)	550, 633, 820, 821
BmrFI	CCNGG	2 cut(s)	467, 538
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	7 cut(s)	26, 420, 567, 589, 682, 690, 843
BmuI	ACTGGG	1 cut(s)	883
BplI	GAGNNNNNCTC	3 cut(s)	473, 505, 869
BpmI	CTGGAG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	38, 543
BpuMI	CCSGG	2 cut(s)	467, 538
BsaHI	GRCGYC	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	227, 798
BsaWI	WCCGGW	4 cut(s)	70, 177, 340, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 520, 894
Bse118I	RCCGGY	2 cut(s)	70, 513
Bse1I	ACTGG	2 cut(s)	171, 889
Bse21I	CCTNAGG	1 cut(s)	705
BseAI	TCCGGA	2 cut(s)	177, 340
BseDI	CCNNGG	2 cut(s)	227, 798
BseGI	GGATG	6 cut(s)	17, 205, 478, 512, 582, 858
BseLI	CCNNNNNNNGG	3 cut(s)	366, 520, 894
BseMII	CTCAG	4 cut(s)	534, 578, 719, 783
BseNI	ACTGG	2 cut(s)	171, 889
BseXI	GCAGC	2 cut(s)	20, 658
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	225, 611, 663, 733, 869
BshNI	GGYRCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	15
BsiHKCI	CYCGRG	2 cut(s)	665, 742
BsiSI	CCGG	8 cut(s)	71, 178, 341, 466, 514, 537, 635, 650
BslFI	GGGAC	4 cut(s)	393, 553, 570, 805
BslI	CCNNNNNNNGG	3 cut(s)	366, 520, 894
BsmAI	GTCTC	1 cut(s)	889
BsmBI	CGTCTC	1 cut(s)	889
BsmFI	GGGAC	4 cut(s)	393, 553, 570, 805
BsnI	GGCC	5 cut(s)	225, 611, 663, 733, 869
BsoBI	CYCGRG	2 cut(s)	665, 742
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp13I	TCCGGA	2 cut(s)	177, 340
Bsp143I	GATC	4 cut(s)	12, 191, 405, 462
Bsp19I	CCATGG	2 cut(s)	227, 798
BspACI	CCGC	5 cut(s)	494, 710, 761, 770, 815
BspANI	GGCC	5 cut(s)	225, 611, 663, 733, 869
BspCNI	CTCAG	4 cut(s)	535, 577, 718, 784
BspEI	TCCGGA	2 cut(s)	177, 340
BspLI	GGNNCC	4 cut(s)	550, 633, 820, 821
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	413, 457
BspT107I	GGYRCC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	89
BsrFI	RCCGGY	2 cut(s)	70, 513
BsrI	ACTGG	2 cut(s)	171, 889
BssAI	RCCGGY	2 cut(s)	70, 513
BssECI	CCNNGG	2 cut(s)	227, 798
BssMI	GATC	4 cut(s)	12, 191, 405, 462
BssNI	GRCGYC	1 cut(s)	803
BssSI	CACGAG	2 cut(s)	207, 735
BssT1I	CCWWGG	2 cut(s)	227, 798
Bst2BI	CACGAG	2 cut(s)	207, 735
Bst4CI	ACNGT	3 cut(s)	272, 364, 602
BstACI	GRCGYC	1 cut(s)	803
BstAFI	CTTAAG	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstC8I	GCNNGC	4 cut(s)	118, 243, 515, 867
BstDEI	CTNAG	4 cut(s)	543, 564, 705, 792
BstDSI	CCRYGG	2 cut(s)	227, 798
BstEII	GGTNACC	1 cut(s)	637
BstF5I	GGATG	6 cut(s)	17, 205, 478, 512, 582, 858
BstKTI	GATC	4 cut(s)	15, 194, 408, 465
BstMAI	GTCTC	1 cut(s)	889
BstMBI	GATC	4 cut(s)	12, 191, 405, 462
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 35, 247, 491, 523, 767, 853, 862
BstPI	GGTNACC	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	465, 536
BstSFI	CTRYAG	2 cut(s)	6, 678
BstV1I	GCAGC	2 cut(s)	20, 658
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	5 cut(s)	225, 611, 663, 733, 869
BtgI	CCRYGG	2 cut(s)	227, 798
BtsCI	GGATG	6 cut(s)	17, 205, 478, 512, 582, 858
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	165, 360
Cac8I	GCNNGC	4 cut(s)	118, 243, 515, 867
CaiI	CAGNNNCTG	1 cut(s)	526
Cfr10I	RCCGGY	2 cut(s)	70, 513
Cfr13I	GGNCC	3 cut(s)	224, 609, 819
CseI	GACGC	1 cut(s)	792
Csp6I	GTAC	2 cut(s)	164, 549
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	7 cut(s)	22, 228, 247, 411, 799, 808, 848
CviQI	GTAC	2 cut(s)	164, 549
DdeI	CTNAG	4 cut(s)	543, 564, 705, 792
DpnI	GATC	4 cut(s)	14, 193, 407, 464
DpnII	GATC	4 cut(s)	12, 191, 405, 462
EciI	GGCGGA	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	227, 798
Eco147I	AGGCCT	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	819
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	2 cut(s)	665, 742
Eco91I	GGTNACC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	819
EcoO65I	GGTNACC	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	227, 798
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	2 cut(s)	227, 798
Esp3I	CGTCTC	1 cut(s)	889
FaeI	CATG	7 cut(s)	25, 231, 250, 414, 802, 811, 851
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	4 cut(s)	393, 553, 570, 805
FatI	CATG	7 cut(s)	21, 227, 246, 410, 798, 807, 847
FauI	CCCGC	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	776
Fnu4HI	GCNGC	4 cut(s)	6, 9, 647, 762
FokI	GGATG	6 cut(s)	4, 212, 485, 519, 589, 865
FriOI	GRGCYC	1 cut(s)	882
Fsp4HI	GCNGC	4 cut(s)	6, 9, 647, 762
GluI	GCNGC	4 cut(s)	6, 9, 647, 762
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	5 cut(s)	225, 611, 663, 733, 869
HapII	CCGG	8 cut(s)	71, 178, 341, 466, 514, 537, 635, 650
HgaI	GACGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	7 cut(s)	25, 231, 250, 414, 802, 811, 851
HinfI	GANTC	6 cut(s)	85, 170, 476, 488, 773, 794
HpaII	CCGG	8 cut(s)	71, 178, 341, 466, 514, 537, 635, 650
HphI	GGTGA	2 cut(s)	631, 848
Hpy166II	GTNNAC	3 cut(s)	605, 715, 777
Hpy188I	TCNGA	3 cut(s)	280, 481, 793
Hpy188III	TCNNGA	5 cut(s)	178, 256, 341, 397, 744
Hpy8I	GTNNAC	3 cut(s)	605, 715, 777
HpyAV	CCTTC	6 cut(s)	53, 97, 211, 718, 723, 805
HpyCH4III	ACNGT	3 cut(s)	272, 364, 602
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	8 cut(s)	8, 120, 153, 433, 580, 646, 847, 856
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 35, 247, 491, 523, 767, 853, 862
HpyF3I	CTNAG	4 cut(s)	543, 564, 705, 792
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	7 cut(s)	25, 231, 250, 414, 802, 811, 851
KflI	GGGWCCC	1 cut(s)	819
Kpn2I	TCCGGA	2 cut(s)	177, 340
KpnI	GGTACC	1 cut(s)	552
KroI	GCCGGC	1 cut(s)	513
KroNI	GCCGGC	1 cut(s)	515
Kzo9I	GATC	4 cut(s)	12, 191, 405, 462
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	20, 658
LweI	GCATC	7 cut(s)	26, 420, 567, 589, 682, 690, 843
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	319, 637
MalI	GATC	4 cut(s)	14, 193, 407, 464
MboI	GATC	4 cut(s)	12, 191, 405, 462
MboII	GAAGA	5 cut(s)	77, 226, 279, 709, 733
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	882
MluCI	AATT	2 cut(s)	121, 383
MlyI	GAGTC	4 cut(s)	470, 482, 782, 803
MmeI	TCCRAC	2 cut(s)	279, 306
Mph1103I	ATGCAT	1 cut(s)	582
MroI	TCCGGA	2 cut(s)	177, 340
MroNI	GCCGGC	1 cut(s)	513
MseI	TTAA	2 cut(s)	90, 144
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	8 cut(s)	71, 178, 341, 466, 514, 537, 635, 650
MspR9I	CCNGG	2 cut(s)	467, 538
MwoI	GCNNNNNNNGC	8 cut(s)	14, 35, 247, 491, 523, 767, 853, 862
NaeI	GCCGGC	1 cut(s)	515
NciI	CCSGG	2 cut(s)	467, 538
NcoI	CCATGG	2 cut(s)	227, 798
NdeII	GATC	4 cut(s)	12, 191, 405, 462
NgoMIV	GCCGGC	1 cut(s)	513
NlaIII	CATG	7 cut(s)	25, 231, 250, 414, 802, 811, 851
NlaIV	GGNNCC	4 cut(s)	550, 633, 820, 821
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	582
PaeR7I	CTCGAG	2 cut(s)	665, 742
PceI	AGGCCT	1 cut(s)	733
PdiI	GCCGGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	85, 170
PflMI	CCANNNNNTGG	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	7, 10, 648, 763
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	4 cut(s)	470, 482, 781, 802
PpsI	GAGTC	4 cut(s)	470, 482, 781, 802
PpuMI	RGGWCCY	1 cut(s)	819
Psp5II	RGGWCCY	1 cut(s)	819
PspEI	GGTNACC	1 cut(s)	637
PspN4I	GGNNCC	4 cut(s)	550, 633, 820, 821
PspPI	GGNCC	3 cut(s)	224, 609, 819
PspPPI	RGGWCCY	1 cut(s)	819
PspXI	VCTCGAGB	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	15
RgaI	GCGATCGC	1 cut(s)	15
RsaI	GTAC	2 cut(s)	165, 550
RsaNI	GTAC	2 cut(s)	164, 549
SaqAI	TTAA	2 cut(s)	90, 144
SatI	GCNGC	4 cut(s)	6, 9, 647, 762
Sau3AI	GATC	4 cut(s)	12, 191, 405, 462
Sau96I	GGNCC	3 cut(s)	224, 609, 819
SchI	GAGTC	4 cut(s)	470, 482, 782, 803
ScrFI	CCNGG	2 cut(s)	467, 538
SduI	GDGCHC	1 cut(s)	882
SfaAI	GCGATCGC	1 cut(s)	15
SfaNI	GCATC	7 cut(s)	26, 420, 567, 589, 682, 690, 843
SfcI	CTRYAG	2 cut(s)	6, 678
Sfr274I	CTCGAG	2 cut(s)	665, 742
SgfI	GCGATCGC	1 cut(s)	15
SinI	GGWCC	1 cut(s)	819
SlaI	CTCGAG	2 cut(s)	665, 742
SmlI	CTYRAG	5 cut(s)	53, 89, 558, 665, 742
SmoI	CTYRAG	5 cut(s)	53, 89, 558, 665, 742
Sse9I	AATT	2 cut(s)	121, 383
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	5 cut(s)	494, 710, 761, 770, 815
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	465, 536
StyI	CCWWGG	2 cut(s)	227, 798
TaaI	ACNGT	3 cut(s)	272, 364, 602
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	666, 743
TasI	AATT	2 cut(s)	121, 383
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	85, 170
Tru1I	TTAA	2 cut(s)	90, 144
Tru9I	TTAA	2 cut(s)	90, 144
TscAI	CASTG	2 cut(s)	165, 367
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	5, 8, 646
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	165, 367
Van91I	CCANNNNNTGG	1 cut(s)	366
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XhoI	CTCGAG	2 cut(s)	665, 742
XmiI	GTMKAC	1 cut(s)	776
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.