Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002922.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

54008 .. 54533

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgagcaatggtatttgtactgctgttcttaggggccattctagcttggttaaaggagttacttgggatccgattggctccttcatagcaagtcaatcagatgataagactgtaattatttggcgaacaagtgactggagtcttgctcacaaaacagacggccacagggcaaaatcacttggatctacctttttcaggaggcttggatggtccccttgtggtcatttcattagtaccactcatgggttccagaaaccaaggcattcagcacctgttctagagagaggggaatggtctgccacttttgacttcttaagacataatgcacctgtgattgtggtgaagtttaaccactcaatgtttaagaggaatttttccaatgctcaagaagggaaagctgcacctgttgggtggaccaactttcaatatagctggcagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

147

Amino Acids

16.6

Weight (kDa)

10.1

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	2 - 65	1.9e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	3 - 58	1.8e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	4 - 106	1.7e-08	WDHD1 first WD40 domain
WD40	PF00400	5 - 41	1.7e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	6 - 58	1e-06	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	7 - 79	2.3e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	62, 75, 190
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	19, 235
AfiI	CCNNNNNNNGG	2 cut(s)	195, 243
AflII	CTTAAG	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	425
AluBI	AGCT	3 cut(s)	45, 398, 432
AluI	AGCT	3 cut(s)	45, 398, 432
AlwI	GGATC	3 cut(s)	62, 75, 190
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	34, 160
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	34, 210, 414
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	210, 414
BamHI	GGATCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	42, 278
BfrI	CTTAAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	210, 414
BmgT120I	GGNCC	3 cut(s)	34, 210, 414
BmiI	GGNNCC	5 cut(s)	35, 69, 79, 212, 248
BoxI	GACNNNNGTC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 243
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	195, 243
BseMI	GCAATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	36, 162
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	195, 243
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	36, 162
Bsp143I	GATC	2 cut(s)	67, 182
BspANI	GGCC	2 cut(s)	36, 162
BspLI	GGNNCC	5 cut(s)	35, 69, 79, 212, 248
BspPI	GGATC	3 cut(s)	62, 75, 190
BspTI	CTTAAG	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	67, 182
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	29
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	70, 185
BstMBI	GATC	2 cut(s)	67, 182
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	67, 182
BstYI	RGATCY	2 cut(s)	67, 182
BsuRI	GGCC	2 cut(s)	36, 162
BtsCI	GGATG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	34, 210, 414
Csp6I	GTAC	2 cut(s)	18, 234
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	36, 45, 78, 162, 202, 398, 432
CviKI_1	RGCY	7 cut(s)	36, 45, 78, 162, 202, 398, 432
CviQI	GTAC	2 cut(s)	18, 234
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	69, 184
DpnII	GATC	2 cut(s)	67, 182
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	210, 414
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	86, 243, 321, 429
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	42, 278
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	36, 162
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	2 cut(s)	72, 100
Hpy188III	TCNNGA	4 cut(s)	196, 250, 278, 386
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	91, 383
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	326, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	67, 182
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	121, 151, 181, 263, 285, 342, 417, 418
Lsp1109I	GCAGC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	42, 278
MaeIII	GTNAC	2 cut(s)	58, 131
MalI	GATC	2 cut(s)	69, 184
MboI	GATC	2 cut(s)	67, 182
MflI	RGATCY	2 cut(s)	67, 182
MluCI	AATT	2 cut(s)	114, 370
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	192, 278, 360
MseI	TTAA	5 cut(s)	51, 314, 348, 363, 442
MspCI	CTTAAG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	67, 182
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	5 cut(s)	35, 69, 79, 212, 248
NmuCI	GTSAC	1 cut(s)	131
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PshAI	GACNNNNGTC	1 cut(s)	138
PspN4I	GGNNCC	5 cut(s)	35, 69, 79, 212, 248
PspPI	GGNCC	3 cut(s)	34, 210, 414
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	67, 182
RsaI	GTAC	2 cut(s)	19, 235
RsaNI	GTAC	2 cut(s)	18, 234
SaqAI	TTAA	5 cut(s)	51, 314, 348, 363, 442
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	67, 182
Sau96I	GGNCC	3 cut(s)	34, 210, 414
SchI	GAGTC	1 cut(s)	148
SetI	ASST	7 cut(s)	47, 191, 274, 331, 400, 406, 434
SinI	GGWCC	2 cut(s)	210, 414
SmlI	CTYRAG	2 cut(s)	313, 384
SmoI	CTYRAG	2 cut(s)	313, 384
Sse9I	AATT	2 cut(s)	114, 370
SspMI	CTAG	2 cut(s)	42, 278
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	2 cut(s)	114, 370
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	5 cut(s)	51, 314, 348, 363, 442
Tru9I	TTAA	5 cut(s)	51, 314, 348, 363, 442
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	73, 217
Vha464I	CTTAAG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	210, 414
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	277
XspI	CTAG	2 cut(s)	42, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.