Rmu_sc0002931.1_g000029

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002931.1
N/A
Physical Location & Seq
Reverse (-)
127241 .. 127588
348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
atgactcgtcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactctttgcttcctgacctagaagtgagatggcatagctttcgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaattcttaatggaattctgtgataaagagatcacagatgcgatgttgtttgagaagactctctctaccttcgagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactctttgcttcctgacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.66

Weight (kDa)

4.92

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 200, 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 104, 296, 328
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 76, 300
ApoI RAATTY 2 cut(s) 200, 212
Asp700I GAANNNNTTC 1 cut(s) 189
BbsI GAAGAC 3 cut(s) 57, 260, 281
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcoDI GTCTC 2 cut(s) 76, 300
BfaI CTAG 2 cut(s) 122, 346
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 3 cut(s) 57, 260, 281
BpmI CTGGAG 1 cut(s) 11
BsaI GGTCTC 2 cut(s) 76, 300
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 76, 300
Bso31I GGTCTC 2 cut(s) 76, 300
Bsp143I GATC 1 cut(s) 228
BspTNI GGTCTC 2 cut(s) 76, 300
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 228
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 76, 300
BstMBI GATC 1 cut(s) 228
BstV2I GAAGAC 3 cut(s) 57, 260, 281
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 3 cut(s) 64, 141, 288
CviKI_1 RGCY 3 cut(s) 64, 141, 288
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco31I GGTCTC 2 cut(s) 76, 300
EcoRI GAATTC 1 cut(s) 212
FaiI YATR 6 cut(s) 12, 14, 39, 41, 138, 177
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 122, 346
GsuI CTGGAG 1 cut(s) 11
HinfI GANTC 5 cut(s) 4, 20, 104, 256, 328
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 116, 170, 271, 340
HpyAV CCTTC 3 cut(s) 54, 277, 278
HpyCH4IV ACGT 2 cut(s) 96, 320
HpySE526I ACGT 2 cut(s) 96, 320
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 41, 70, 129, 294
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 122, 346
MaeII ACGT 2 cut(s) 96, 320
MaeIII GTNAC 2 cut(s) 101, 325
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 6 cut(s) 59, 62, 92, 265, 286, 316
MluCI AATT 2 cut(s) 200, 212
MlyI GAGTC 3 cut(s) 98, 250, 322
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 101, 325
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 3 cut(s) 98, 250, 322
PpsI GAGTC 3 cut(s) 98, 250, 322
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 3 cut(s) 98, 250, 322
SetI ASST 6 cut(s) 99, 123, 143, 269, 323, 347
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 200, 212
SspMI CTAG 2 cut(s) 122, 346
TaiI ACGT 2 cut(s) 99, 323
TaqI TCGA 3 cut(s) 78, 270, 302
TasI AATT 2 cut(s) 200, 212
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 2 cut(s) 101, 325
Tsp45I GTSAC 2 cut(s) 101, 325
TspDTI ATGAA 2 cut(s) 56, 60
TspGWI ACGGA 2 cut(s) 89, 313
XapI RAATTY 2 cut(s) 200, 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 122, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.