Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002942.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

83138 .. 87336

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggaactgtctcaggtatggaatcgacgaaagggagaaaccgagaggagcttgatggaatcgacaaaagaggagcttgatggaatcgacggcgcaggtctggaaacgacagaaggaggattcgaggagagctggaaaggcggcagatatggaattgacagtgcagcaacgctaggcagtgagccggtgactgaaggaggagtcgaggagagctggagaggcggcatatcatgtaggatttgcaaaaccgctgttgtaaccaagaatcattgtttggattgggttgggcttgcggtgcttgatggtggtgagtatcggtctcatcagatttcattatggattggggttgggtacctgcatctaaggattctaggcaacagcagctccgcaggttcgtttcgttgttatgggcaacatcaaagacggagactttgctttcagttggaaagcaaccactctcatcaaggtttttctatcctcaccattctggattattacttcaattcttttcgccagggtgaaagcattctatcatggattggagatgattatgttgttctagattataagactgctgcgcatcttgagagaatgacgaagttagggaagctgaaccgaaccgcggctcatcgcatgtatatgctgaggacgatggtatcacagttggtgaagcacgagtgcattgaaaccgctgttgccaaggcaaaagaggttcgacgtcaggctgatagaatggtgcagcttggaaaagatggttcactcagctgcagtgaggagttatgtagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

263

Amino Acids

29.59

Weight (kDa)

7.1

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	214 - 258	6.1e-11	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AatII	GACGTC	1 cut(s)	721
Acc16I	TGCGCA	1 cut(s)	579
Acc36I	ACCTGC	3 cut(s)	86, 363, 380
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccII	CGCG	1 cut(s)	623
AciI	CCGC	8 cut(s)	141, 222, 249, 293, 387, 621, 623, 690
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	502, 686
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	8 cut(s)	51, 76, 132, 213, 384, 610, 742, 765
AluI	AGCT	8 cut(s)	51, 76, 132, 213, 384, 610, 742, 765
Alw26I	GTCTC	3 cut(s)	15, 324, 421
ApeKI	GCWGC	5 cut(s)	164, 381, 575, 739, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	95, 580
AsuHPI	GGTGA	5 cut(s)	199, 320, 472, 530, 679
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BanI	GGYRCC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	644
BbvI	GCAGC	5 cut(s)	176, 393, 562, 751, 752
BccI	CCATC	5 cut(s)	49, 74, 296, 646, 746
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	3 cut(s)	15, 324, 421
BfaI	CTAG	3 cut(s)	173, 371, 560
BfmI	CTRYAG	1 cut(s)	766
BfuAI	ACCTGC	3 cut(s)	86, 363, 380
BisI	GCNGC	8 cut(s)	142, 165, 223, 382, 576, 624, 740, 766
BlsI	GCNGC	8 cut(s)	143, 166, 224, 383, 577, 625, 741, 767
Bme1390I	CCNGG	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	367, 589
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	514, 621, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	514, 621, 699
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	3 cut(s)	26, 635, 775
BseRI	GAGGAG	6 cut(s)	61, 86, 140, 213, 221, 788
BseXI	GCAGC	5 cut(s)	176, 393, 562, 751, 752
BsgI	GTGCAG	2 cut(s)	183, 758
Bsh1236I	CGCG	1 cut(s)	623
BshNI	GGYRCC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	3 cut(s)	15, 324, 421
BsmI	GAATGC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	324
BspACI	CCGC	8 cut(s)	141, 222, 249, 293, 387, 621, 623, 690
BspCNI	CTCAG	3 cut(s)	25, 636, 774
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	770
BspMI	ACCTGC	3 cut(s)	86, 363, 380
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	514, 621, 699
BssNI	GRCGYC	1 cut(s)	718
BssSI	CACGAG	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	3 cut(s)	9, 161, 663
BstACI	GRCGYC	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	12, 362, 644, 761
BstDSI	CCRYGG	1 cut(s)	621
BstFNI	CGCG	1 cut(s)	623
BstHHI	GCGC	2 cut(s)	95, 580
BstMAI	GTCTC	3 cut(s)	15, 324, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 219, 295, 381
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	766
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	5 cut(s)	176, 393, 562, 751, 752
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	614
BtsI	GCAGTG	2 cut(s)	184, 775
BtsIMutI	CAGTG	3 cut(s)	166, 184, 775
BveI	ACCTGC	3 cut(s)	86, 363, 380
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	2 cut(s)	95, 580
Cfr10I	RCCGGY	1 cut(s)	184
Cfr42I	CCGCGG	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	231, 534, 634
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	12, 362, 644, 761
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	3 cut(s)	234, 537, 637
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	3 cut(s)	230, 533, 633
Fnu4HI	GCNGC	8 cut(s)	142, 165, 223, 382, 576, 624, 740, 766
Fsp4HI	GCNGC	8 cut(s)	142, 165, 223, 382, 576, 624, 740, 766
FspBI	CTAG	3 cut(s)	173, 371, 560
FspI	TGCGCA	1 cut(s)	579
GlaI	GCGC	2 cut(s)	94, 579
GluI	GCNGC	8 cut(s)	142, 165, 223, 382, 576, 624, 740, 766
GsuI	CTGGAG	1 cut(s)	235
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	2 cut(s)	95, 580
Hin1I	GRCGYC	1 cut(s)	718
Hin1II	CATG	3 cut(s)	234, 537, 637
Hin6I	GCGC	2 cut(s)	93, 578
HinP1I	GCGC	2 cut(s)	93, 578
HinfI	GANTC	7 cut(s)	22, 59, 84, 120, 201, 265, 367
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	5 cut(s)	199, 320, 472, 530, 679
Hpy166II	GTNNAC	1 cut(s)	758
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	4 cut(s)	101, 488, 560, 584
Hpy8I	GTNNAC	1 cut(s)	758
Hpy99I	CGWCG	3 cut(s)	30, 92, 720
HpyAV	CCTTC	2 cut(s)	107, 188
HpyCH4III	ACNGT	3 cut(s)	9, 161, 663
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	6 cut(s)	164, 243, 358, 681, 739, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 219, 295, 381
HpyF3I	CTNAG	4 cut(s)	12, 362, 644, 761
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	718
Hsp92II	CATG	3 cut(s)	234, 537, 637
HspAI	GCGC	2 cut(s)	93, 578
KpnI	GGTACC	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	624
LmnI	GCTCC	3 cut(s)	48, 73, 389
Lsp1109I	GCAGC	5 cut(s)	176, 393, 562, 751, 752
LweI	GCATC	2 cut(s)	367, 589
MaeI	CTAG	3 cut(s)	173, 371, 560
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	2 cut(s)	187, 256
MluCI	AATT	2 cut(s)	153, 502
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	4 cut(s)	251, 623, 692, 765
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	4 cut(s)	138, 219, 295, 381
NlaIII	CATG	3 cut(s)	234, 537, 637
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	187
NsbI	TGCGCA	1 cut(s)	579
NspI	RCATGY	1 cut(s)	637
PctI	GAATGC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	6 cut(s)	22, 59, 84, 120, 265, 367
PkrI	GCNGC	8 cut(s)	143, 166, 224, 383, 577, 625, 741, 767
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	638
SacII	CCGCGG	1 cut(s)	624
SatI	GCNGC	8 cut(s)	142, 165, 223, 382, 576, 624, 740, 766
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	367, 589
SfcI	CTRYAG	1 cut(s)	766
Sfr303I	CCGCGG	1 cut(s)	624
SgrBI	CCGCGG	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	153, 502
SsiI	CCGC	8 cut(s)	141, 222, 249, 293, 387, 621, 623, 690
SspMI	CTAG	3 cut(s)	173, 371, 560
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	9, 161, 663
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	6 cut(s)	25, 62, 87, 123, 204, 715
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	153, 502
TauI	GCSGC	3 cut(s)	144, 225, 626
TfiI	GAWTC	6 cut(s)	22, 59, 84, 120, 265, 367
TscAI	CASTG	3 cut(s)	166, 184, 775
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	5 cut(s)	164, 381, 575, 739, 765
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	3 cut(s)	166, 184, 775
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	173, 371, 560
ZraI	GACGTC	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.