Rmu_sc0002944.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002944.1
N/A
Physical Location & Seq
Reverse (-)
178506 .. 180051
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
atgcctgggacaggaggcttcatcagctcgttcagccattactacttcaccgctttccctaatatacaatttggggaggaaacttctatgtggcctatgtggacaaagtcttatcaatttggtccaggactcatggataccatattctttcacttccaagatatcaagagaagaatcagcaccaattggatacagaatagaatcgcaagcaacccgcctgcacaccagcccgcaaacctgctgctgctgcccactgctgcactactgccgaccactagctgctgctgcttctacttgtcgctgctactcactgctgccctaacatgcctgctccaacacgcgcgtgtcttcaagccaagaacaatcacgatgtcgaatgaacctaggcttgacttccctatgcttgactcaacaggctcggattaccacagttgggcacctaacccggatcttgtgttcatccgaacatctacaaagcatgctaaagcagttatcttgatgcgacgccatatgaagaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgttgctaatataattcagaggctcttcgcttacaatccatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

235

Amino Acids

27.09

Weight (kDa)

9.28

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 436
AccII CGCG 2 cut(s) 341, 343
AciI CCGC 3 cut(s) 51, 215, 231
AclWI GGATC 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 505
AfeI AGCGCT 2 cut(s) 573, 584
AfiI CCNNNNNNNGG 2 cut(s) 11, 433
AgsI TTSAA 4 cut(s) 352, 622, 629, 658
AhdI GACNNNNNGTC 1 cut(s) 658
AjnI CCWGG 2 cut(s) 4, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AleI CACNNNNGTG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 3 cut(s) 27, 279, 562
AluI AGCT 3 cut(s) 27, 279, 562
AlwI GGATC 1 cut(s) 456
Aor51HI AGCGCT 2 cut(s) 573, 584
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 9 cut(s) 241, 244, 247, 257, 279, 282, 285, 301, 314
AspA2I CCTAGG 1 cut(s) 383
AspLEI GCGC 4 cut(s) 343, 574, 585, 645
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 340
BbvI GCAGC 9 cut(s) 228, 231, 234, 244, 266, 269, 272, 288, 301
BciT130I CCWGG 2 cut(s) 6, 126
BciVI GTATCC 2 cut(s) 130, 183
BcnI CCSGG 1 cut(s) 446
BfaI CTAG 3 cut(s) 276, 384, 575
BfoI RGCGCY 2 cut(s) 575, 586
BfuAI ACCTGC 1 cut(s) 246
BfuI GTATCC 2 cut(s) 130, 183
BisI GCNGC 9 cut(s) 242, 245, 248, 258, 280, 283, 286, 302, 315
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 9 cut(s) 243, 246, 249, 259, 281, 284, 287, 303, 316
Bme1390I CCNGG 3 cut(s) 6, 126, 446
Bme18I GGWCC 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 3 cut(s) 6, 126, 446
BmsI GCATC 2 cut(s) 489, 541
BpiI GAAGAC 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 5, 383
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 433
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 2 cut(s) 6, 126
BseDI CCNNGG 2 cut(s) 5, 383
BseGI GGATG 2 cut(s) 459, 556
BseLI CCNNNNNNNGG 2 cut(s) 11, 433
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 538
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 9 cut(s) 228, 231, 234, 244, 266, 269, 272, 288, 301
BsgI GTGCAG 2 cut(s) 204, 243
Bsh1236I CGCG 2 cut(s) 341, 343
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 11, 433
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 448, 543
BspACI CCGC 3 cut(s) 51, 215, 231
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 537
BspFNI CGCG 2 cut(s) 341, 343
BspLI GGNNCC 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 2 cut(s) 573, 692
BspT107I GGYRCC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 598
BssECI CCNNGG 2 cut(s) 5, 383
BssMI GATC 2 cut(s) 448, 543
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 2 cut(s) 6, 126
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 573, 692
BstACI GRCGYC 1 cut(s) 505
BstC8I GCNNGC 5 cut(s) 208, 219, 231, 329, 480
BstDEI CTNAG 1 cut(s) 524
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 459, 556
BstFNI CGCG 2 cut(s) 341, 343
BstH2I RGCGCY 2 cut(s) 575, 586
BstHHI GCGC 4 cut(s) 343, 574, 585, 645
BstKTI GATC 2 cut(s) 451, 546
BstMBI GATC 2 cut(s) 448, 543
BstMWI GCNNNNNNNGC 5 cut(s) 24, 33, 247, 285, 580
BstNI CCWGG 2 cut(s) 6, 126
BstNSI RCATGY 2 cut(s) 327, 482
BstSCI CCNGG 3 cut(s) 4, 124, 444
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 2 cut(s) 341, 343
BstV1I GCAGC 9 cut(s) 228, 231, 234, 244, 266, 269, 272, 288, 301
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuI GTATCC 2 cut(s) 130, 183
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 459, 556
BtsI GCAGTG 2 cut(s) 252, 309
BtsIMutI CAGTG 2 cut(s) 252, 309
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 5 cut(s) 208, 219, 231, 329, 480
CfoI GCGC 4 cut(s) 343, 574, 585, 645
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 513
CviAII CATG 4 cut(s) 133, 324, 479, 702
DdeI CTNAG 1 cut(s) 524
DpnI GATC 2 cut(s) 450, 545
DpnII GATC 2 cut(s) 448, 543
DriI GACNNNNNGTC 1 cut(s) 658
Eam1104I CTCTTC 2 cut(s) 573, 692
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 2 cut(s) 573, 692
Eco130I CCWWGG 1 cut(s) 383
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 122
Eco47III AGCGCT 2 cut(s) 573, 584
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 4, 124
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 4 cut(s) 136, 327, 482, 705
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 132, 323, 478, 701
FauI CCCGC 2 cut(s) 222, 238
FauNDI CATATG 1 cut(s) 510
Fnu4HI GCNGC 9 cut(s) 242, 245, 248, 258, 280, 283, 286, 302, 315
FokI GGATG 2 cut(s) 446, 563
Fsp4HI GCNGC 9 cut(s) 242, 245, 248, 258, 280, 283, 286, 302, 315
FspBI CTAG 3 cut(s) 276, 384, 575
GlaI GCGC 4 cut(s) 342, 573, 584, 644
GluI GCNGC 9 cut(s) 242, 245, 248, 258, 280, 283, 286, 302, 315
HaeII RGCGCY 2 cut(s) 575, 586
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 513
HhaI GCGC 4 cut(s) 343, 574, 585, 645
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 4 cut(s) 136, 327, 482, 705
Hin6I GCGC 4 cut(s) 341, 572, 583, 643
HinP1I GCGC 4 cut(s) 341, 572, 583, 643
HinfI GANTC 5 cut(s) 129, 174, 201, 407, 602
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 4 cut(s) 421, 464, 527, 681
Hpy188III TCNNGA 3 cut(s) 166, 367, 496
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 511, 616
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 221, 260, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 33, 247, 285, 580
HpyF3I CTNAG 1 cut(s) 524
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 4 cut(s) 136, 327, 482, 705
HspAI GCGC 4 cut(s) 341, 572, 583, 643
Kzo9I GATC 2 cut(s) 448, 543
LguI GCTCTTC 2 cut(s) 573, 692
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 9 cut(s) 228, 231, 234, 244, 266, 269, 272, 288, 301
LweI GCATC 2 cut(s) 489, 541
MaeI CTAG 3 cut(s) 276, 384, 575
MalI GATC 2 cut(s) 450, 545
MboI GATC 2 cut(s) 448, 543
MboII GAAGA 5 cut(s) 183, 340, 526, 590, 679
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 4 cut(s) 68, 116, 184, 675
MlyI GAGTC 2 cut(s) 123, 401
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 5 cut(s) 8, 70, 617, 620, 675
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 6, 126, 446
MunI CAATTG 1 cut(s) 184
MvaI CCWGG 2 cut(s) 6, 126
MvnI CGCG 2 cut(s) 341, 343
MwoI GCNNNNNNNGC 5 cut(s) 24, 33, 247, 285, 580
NciI CCSGG 1 cut(s) 446
NdeI CATATG 1 cut(s) 510
NdeII GATC 2 cut(s) 448, 543
NlaIII CATG 4 cut(s) 136, 327, 482, 705
NlaIV GGNNCC 1 cut(s) 438
NspI RCATGY 2 cut(s) 327, 482
OliI CACNNNNGTG 1 cut(s) 342
PaeI GCATGC 1 cut(s) 482
PciSI GCTCTTC 2 cut(s) 573, 692
PfeI GAWTC 3 cut(s) 174, 201, 602
PflFI GACNNNGTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 9 cut(s) 243, 246, 249, 259, 281, 284, 287, 303, 316
PleI GAGTC 2 cut(s) 123, 401
PpsI GAGTC 2 cut(s) 123, 401
Psp6I CCWGG 2 cut(s) 4, 124
PspGI CCWGG 2 cut(s) 4, 124
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 342
SapI GCTCTTC 2 cut(s) 573, 692
SatI GCNGC 9 cut(s) 242, 245, 248, 258, 280, 283, 286, 302, 315
Sau3AI GATC 2 cut(s) 448, 543
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 123, 401
ScrFI CCNGG 3 cut(s) 6, 126, 446
SduI GDGCHC 1 cut(s) 439
SetI ASST 7 cut(s) 29, 240, 281, 385, 442, 564, 627
SfaNI GCATC 2 cut(s) 489, 541
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 342
SphI GCATGC 1 cut(s) 482
Sse9I AATT 4 cut(s) 68, 116, 184, 675
SsiI CCGC 3 cut(s) 51, 215, 231
SspMI CTAG 3 cut(s) 276, 384, 575
StyD4I CCNGG 3 cut(s) 4, 124, 444
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 374, 542
TasI AATT 4 cut(s) 68, 116, 184, 675
TfiI GAWTC 3 cut(s) 174, 201, 602
TscAI CASTG 2 cut(s) 259, 316
TseI GCWGC 9 cut(s) 241, 244, 247, 257, 279, 282, 285, 301, 314
TspDTI ATGAA 4 cut(s) 10, 393, 448, 527
TspRI CASTG 2 cut(s) 259, 316
Tth111I GACNNNGTC 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 9
XceI RCATGY 2 cut(s) 327, 482
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 3 cut(s) 276, 384, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.