Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9865 .. 10182

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgggaatcctcaatgtcgacaaaacctctgatgcagaagctgttgcagtgattcggattcactacttgatggcggctggcgcatccctcatgtcacatctactagcttgtaccacaaaaacattggacctggatacattgcctagtgttccaaccaagaggaaacatgagggtagttcttcaagtgattcgagcgtattctggtggtggttgatggctatttggttagcagtaacattgatagggaacactcttgttgatcttgtgctatttttttgccacaattctggttttgaaagacaccaagacgcctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

5.86

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	183, 296
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	41, 107
AluI	AGCT	2 cut(s)	41, 107
AlwNI	CAGNNNCTG	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
BccI	CCATC	2 cut(s)	64, 208
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	104, 144
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	22, 92
BsaHI	GRCGYC	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	137
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	91, 167
CviJI	RGCY	4 cut(s)	41, 77, 107, 218
CviKI_1	RGCY	4 cut(s)	41, 77, 107, 218
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	94, 170
FaiI	YATR	2 cut(s)	92, 168
FatI	CATG	2 cut(s)	90, 166
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	104, 144
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	94, 170
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	6, 52, 58, 188
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	31, 57
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	35, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	94, 170
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	63, 116, 143, 187, 273
LweI	GCATC	2 cut(s)	22, 92
MaeI	CTAG	2 cut(s)	104, 144
MaeIII	GTNAC	2 cut(s)	93, 232
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	171
MluCI	AATT	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	20, 37, 98, 153, 163
MseI	TTAA	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	94, 170
NmuCI	GTSAC	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	6, 52, 58, 188
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	4 cut(s)	29, 43, 109, 132
SfaNI	GCATC	2 cut(s)	22, 92
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	104, 144
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	2 cut(s)	18, 191
TasI	AATT	1 cut(s)	283
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	6, 52, 58, 188
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	104, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.