Rmu_sc0002969.1_g000009

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002969.1
N/A
Physical Location & Seq
Forward (+)
29434 .. 29907
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002969.1_g000009.1.cds

Sequence Viewer

Length: 474 bp
atgtctagaggatttctcctctttgctgcttacacaacccttacccttcttcgtccatcgtttgttggttcgcaaacttcaagtgctgctaaagatcataattataagtgtgccttttcttgtggtaatattaacatagcccctccatttcgattacaaggagaccctcaagactgtggaaacaaaaggtatgaactatcttgtgagacaaatattacaatattatacttgtactcggggaagtattacgtgcaggaaatcaattacgataacttcacaatccgacttgtggatgctggtgttcagaatatcaactacaacttctccaaccctcttcactcgttaaccagcttcaactttagtgctacagattcctacgtacagctatcctcaatacggatatgcagaactattatcagttccaatcatttttctgagctgtgcaaatccagtgaattctcctctctttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

7.56

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 2 cut(s) 233, 381
AfiI CCNNNNNNNGG 2 cut(s) 289, 396
AgsI TTSAA 2 cut(s) 81, 355
AluBI AGCT 3 cut(s) 351, 385, 439
AluI AGCT 3 cut(s) 351, 385, 439
Alw26I GTCTC 2 cut(s) 156, 200
Ama87I CYCGRG 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 26, 86
ApoI RAATTY 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 235
BbvI GCAGC 2 cut(s) 13, 73
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 156, 200
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 27, 87
BlsI GCNGC 2 cut(s) 28, 88
BmeT110I CYCGRG 1 cut(s) 235
BmsI GCATC 1 cut(s) 283
BplI GAGNNNNNCTC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 153
BsaAI YACGTR 2 cut(s) 250, 379
BsaI GGTCTC 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 396
Bse1I ACTGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 289, 396
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 8, 451
BseXI GCAGC 2 cut(s) 13, 73
BsgI GTGCAG 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 289, 396
BsmAI GTCTC 2 cut(s) 156, 200
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 450
BssMI GATC 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 339
BstBAI YACGTR 2 cut(s) 250, 379
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 156, 200
BstMBI GATC 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 366
BstSNI TACGTA 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 13, 73
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 457
Csp6I GTAC 2 cut(s) 232, 380
CviJI RGCY 4 cut(s) 140, 351, 385, 439
CviKI_1 RGCY 4 cut(s) 140, 351, 385, 439
CviQI GTAC 2 cut(s) 232, 380
DdeI CTNAG 1 cut(s) 435
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco105I TACGTA 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 455
FaiI YATR 6 cut(s) 99, 105, 137, 192, 226, 403
FalI AAGNNNNNCTT 2 cut(s) 98, 130
Fnu4HI GCNGC 2 cut(s) 27, 87
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 27, 87
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 27, 87
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 371
HpaI GTTAAC 1 cut(s) 345
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 284, 306, 436
Hpy188III TCNNGA 2 cut(s) 6, 170
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 2 cut(s) 249, 378
HpyCH4V TGCA 3 cut(s) 253, 405, 444
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 249, 378
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 239, 282, 361, 463
Lsp1109I GCAGC 2 cut(s) 13, 73
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 249, 378
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 41, 326
MluCI AATT 3 cut(s) 100, 262, 455
MmeI TCCRAC 2 cut(s) 307, 351
MnlI CCTC 6 cut(s) 29, 153, 177, 342, 400, 472
MseI TTAA 2 cut(s) 132, 344
NdeII GATC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 28, 88
Ppu21I YACGTR 2 cut(s) 250, 379
PsiI TTATAA 1 cut(s) 105
RsaI GTAC 2 cut(s) 233, 381
RsaNI GTAC 2 cut(s) 232, 380
SaqAI TTAA 2 cut(s) 132, 344
SatI GCNGC 2 cut(s) 27, 87
Sau3AI GATC 1 cut(s) 94
SetI ASST 6 cut(s) 191, 252, 353, 381, 387, 441
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SnaBI TACGTA 1 cut(s) 379
Sse9I AATT 3 cut(s) 100, 262, 455
SspI AATATT 3 cut(s) 130, 214, 222
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 2 cut(s) 252, 381
TaqI TCGA 1 cut(s) 151
TasI AATT 3 cut(s) 100, 262, 455
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 132, 344
Tru9I TTAA 2 cut(s) 132, 344
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 26, 86
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 457
XapI RAATTY 1 cut(s) 455
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.