Rmu_sc0002976.1_g000001

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002976.1
N/A
Physical Location & Seq
Forward (+)
1 .. 673
673 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
gtggagctgattgaagggtcgtcttacttgggacagccccttccattctcactgaccacattgatctggatcgaggttctgctgatcgggtacattgagttccagaggaacgctgagctcgacccagagaagaggttgtacccgggaggtaagttcttcgacccattgggcttggctgctgacccggagaagaaggctacacttcaactggcggaaatcaagcatgcacgtctcgcaatggttgggttccttggatttgctgtgcaggctgctgtcaccggtaaaggcccgcttaacaactgggctacccatttgagtgacccgctccacaccaccattatcgatgccttctcctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

119

Amino Acids

13.02

Weight (kDa)

5.23

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 16 - 90 3e-21 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 325
AciI CCGC 3 cut(s) 212, 290, 323
AclWI GGATC 1 cut(s) 77
AfaI GTAC 2 cut(s) 92, 140
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 2 cut(s) 14, 206
AjiI CACGTC 1 cut(s) 230
AluBI AGCT 2 cut(s) 7, 118
AluI AGCT 2 cut(s) 7, 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 176, 269
AsiGI ACCGGT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 3 cut(s) 143, 144, 185
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 142
BanII GRGCYC 1 cut(s) 120
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 163, 256
BcnI CCSGG 3 cut(s) 143, 144, 185
BcoDI GTCTC 1 cut(s) 236
BisI GCNGC 2 cut(s) 177, 270
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 2 cut(s) 178, 271
Bme1390I CCNGG 3 cut(s) 143, 144, 185
BmeT110I CYCGRG 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 3 cut(s) 143, 144, 185
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 310
Bpu1102I GCTNAGC 1 cut(s) 114
BpuMI CCSGG 3 cut(s) 143, 144, 185
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 142, 250
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 213, 305
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 142, 250
BseJI GATNNNNATC 1 cut(s) 68
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 213, 305
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 163, 256
BsgI GTGCAG 1 cut(s) 284
BshFI GGCC 1 cut(s) 288
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 3 cut(s) 143, 185, 279
BslFI GGGAC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 63, 69, 84
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 3 cut(s) 212, 290, 323
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 213, 305
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 142, 250
BssMI GATC 3 cut(s) 63, 69, 84
BssT1I CCWWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 225, 267, 290
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 3 cut(s) 66, 72, 87
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 3 cut(s) 63, 69, 84
BstMWI GCNNNNNNNGC 2 cut(s) 233, 266
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 3 cut(s) 141, 142, 183
BstV1I GCAGC 2 cut(s) 163, 256
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 1 cut(s) 288
BsuTUI ATCGAT 1 cut(s) 342
BtrI CACGTC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 3 cut(s) 225, 267, 290
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 287
Cfr9I CCCGGG 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 91, 139
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 224
CviJI RGCY 9 cut(s) 7, 37, 118, 171, 176, 197, 269, 288, 305
CviKI_1 RGCY 9 cut(s) 7, 37, 118, 171, 176, 197, 269, 288, 305
CviQI GTAC 2 cut(s) 91, 139
DdeI CTNAG 1 cut(s) 114
DpnI GATC 3 cut(s) 65, 71, 86
DpnII GATC 3 cut(s) 63, 69, 84
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 223
FauI CCCGC 2 cut(s) 297, 330
Fnu4HI GCNGC 2 cut(s) 177, 270
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 177, 270
GluI GCNGC 2 cut(s) 177, 270
HaeIII GGCC 1 cut(s) 288
HapII CCGG 3 cut(s) 143, 185, 279
Hin1II CATG 1 cut(s) 227
HpaII CCGG 3 cut(s) 143, 185, 279
HphI GGTGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 67, 103, 357
HpyAV CCTTC 4 cut(s) 8, 50, 187, 358
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 227, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 266
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 3 cut(s) 63, 69, 84
LmnI GCTCC 2 cut(s) 4, 330
LpnPI CCDG 9 cut(s) 52, 116, 138, 156, 194, 198, 251, 286, 292
Lsp1109I GCAGC 2 cut(s) 163, 256
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 274, 317
MalI GATC 3 cut(s) 65, 71, 86
MbiI CCGCTC 1 cut(s) 325
MboI GATC 3 cut(s) 63, 69, 84
MboII GAAGA 3 cut(s) 142, 148, 202
MhlI GDGCHC 1 cut(s) 120
MnlI CCTC 4 cut(s) 67, 99, 126, 140
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 3 cut(s) 143, 185, 279
MspR9I CCNGG 3 cut(s) 143, 144, 185
MwoI GCNNNNNNNGC 2 cut(s) 233, 266
NciI CCSGG 3 cut(s) 143, 144, 185
NdeII GATC 3 cut(s) 63, 69, 84
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 274, 317
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 178, 271
Psp124BI GAGCTC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 287
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
RsaI GTAC 2 cut(s) 92, 140
RsaNI GTAC 2 cut(s) 91, 139
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 177, 270
Sau3AI GATC 3 cut(s) 63, 69, 84
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 143, 144, 185
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 9, 78, 120, 137, 151, 232
SfaNI GCATC 1 cut(s) 334
SmaI CCCGGG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 315
SphI GCATGC 1 cut(s) 227
SsiI CCGC 3 cut(s) 212, 290, 323
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 141, 142, 183
StyI CCWWGG 1 cut(s) 250
TaiI ACGT 1 cut(s) 232
TaqI TCGA 4 cut(s) 72, 120, 159, 342
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 2 cut(s) 274, 317
TseI GCWGC 2 cut(s) 176, 269
Tsp45I GTSAC 2 cut(s) 274, 317
TspMI CCCGGG 1 cut(s) 142
TspRI CASTG 1 cut(s) 57
XceI RCATGY 1 cut(s) 227
XmaI CCCGGG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.