Rmu_sc0002989.1_g000027

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002989.1
N/A
Physical Location & Seq
Reverse (-)
98987 .. 99456
470 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 470 bp
cctcactctctgtgcctctctctctaatccggttcaatggtgcggatcatctccttcctcccaaatcggttacagcttcctcttctcctgctaatccttctgtgactaacgcactaaccggtttgtttgaatggtttgaatctcaggcaccgaagaaggagaaggcaccgccgccgtcgtcgaagcctgccaagtccggcggaggaaagcagaagaagaagaagtggagcaagggcaagcagaaggagaaggtcaacaacatggtgcttttcgaccaggctacttacgacaagctgctgtccgaggctcccaagttcaagctcatcacgccgtccattctctccgatcgtctcaggatcaacggctctctggccaggcgggcaatcaaggacttgatggctaggggatccatcaggatggtctcggctcacgccagccagcagatttacaccagggccaccaacacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S25

Protein Analysis

155

Amino Acids

16.92

Weight (kDa)

10.48

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S25 PF03297 54 - 152 1.3e-40 S25 ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 147, 165
AciI CCGC 5 cut(s) 43, 169, 172, 200, 378
AclWI GGATC 4 cut(s) 53, 364, 401, 414
AcoI YGGCCR 1 cut(s) 371
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 4 cut(s) 36, 130, 139, 318
AjnI CCWGG 3 cut(s) 275, 373, 451
AluBI AGCT 3 cut(s) 76, 294, 321
AluI AGCT 3 cut(s) 76, 294, 321
Alw26I GTCTC 2 cut(s) 355, 426
AlwI GGATC 4 cut(s) 53, 364, 401, 414
AoxI GGCC 2 cut(s) 371, 455
ApeKI GCWGC 1 cut(s) 294
AsiGI ACCGGT 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 373
BamHI GGATCC 1 cut(s) 406
BanI GGYRCC 2 cut(s) 147, 165
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 390, 411, 418
BceAI ACGGC 3 cut(s) 159, 315, 378
BciT130I CCWGG 3 cut(s) 277, 375, 453
BcoDI GTCTC 2 cut(s) 355, 426
BfaI CTAG 2 cut(s) 401, 468
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 2 cut(s) 172, 295
BlsI GCNGC 2 cut(s) 173, 296
Bme1390I CCNGG 3 cut(s) 277, 375, 453
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 4 cut(s) 149, 167, 308, 408
BmrFI CCNGG 3 cut(s) 277, 375, 453
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 302, 452
BsaWI WCCGGW 2 cut(s) 29, 118
Bse118I RCCGGY 1 cut(s) 118
BseBI CCWGG 3 cut(s) 277, 375, 453
BseDI CCNNGG 2 cut(s) 302, 452
BseGI GGATG 1 cut(s) 422
BseMII CTCAG 2 cut(s) 157, 366
BseXI GCAGC 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 373, 457
BshNI GGYRCC 2 cut(s) 147, 165
BshTI ACCGGT 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 348
BsiSI CCGG 3 cut(s) 30, 119, 197
BsmAI GTCTC 2 cut(s) 355, 426
BsmBI CGTCTC 1 cut(s) 355
BsnI GGCC 2 cut(s) 373, 457
Bso31I GGTCTC 1 cut(s) 426
Bsp143I GATC 4 cut(s) 45, 345, 356, 406
BspACI CCGC 5 cut(s) 43, 169, 172, 200, 378
BspANI GGCC 2 cut(s) 373, 457
BspCNI CTCAG 2 cut(s) 156, 365
BspLI GGNNCC 4 cut(s) 149, 167, 308, 408
BspPI GGATC 4 cut(s) 53, 364, 401, 414
BspT107I GGYRCC 2 cut(s) 147, 165
BspTNI GGTCTC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 302, 452
BssMI GATC 4 cut(s) 45, 345, 356, 406
Bst2UI CCWGG 3 cut(s) 277, 375, 453
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 5 cut(s) 188, 238, 380, 435, 439
BstDEI CTNAG 2 cut(s) 143, 352
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 4 cut(s) 48, 348, 359, 409
BstMAI GTCTC 2 cut(s) 355, 426
BstMBI GATC 4 cut(s) 45, 345, 356, 406
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 2 cut(s) 327, 379
BstNI CCWGG 3 cut(s) 277, 375, 453
BstSCI CCNGG 3 cut(s) 275, 373, 451
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 2 cut(s) 373, 457
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 5 cut(s) 188, 238, 380, 435, 439
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 455
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 1 cut(s) 261
DdeI CTNAG 2 cut(s) 143, 352
DpnI GATC 4 cut(s) 47, 347, 358, 408
DpnII GATC 4 cut(s) 45, 345, 356, 406
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 275, 373, 451
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 1 cut(s) 264
FaiI YATR 1 cut(s) 262
FatI CATG 1 cut(s) 260
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 172, 295
FokI GGATG 1 cut(s) 429
Fsp4HI GCNGC 2 cut(s) 172, 295
FspBI CTAG 2 cut(s) 401, 468
GluI GCNGC 2 cut(s) 172, 295
HaeIII GGCC 2 cut(s) 373, 457
HapII CCGG 3 cut(s) 30, 119, 197
Hin1II CATG 1 cut(s) 264
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 1 cut(s) 139
HpaII CCGG 3 cut(s) 30, 119, 197
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 303, 345
Hpy188III TCNNGA 2 cut(s) 354, 414
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 2 cut(s) 180, 183
HpyAV CCTTC 6 cut(s) 64, 107, 150, 156, 237, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 379
HpyF3I CTNAG 2 cut(s) 143, 352
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 4 cut(s) 45, 345, 356, 406
LmnI GCTCC 2 cut(s) 227, 312
Lsp1109I GCAGC 1 cut(s) 281
MaeI CTAG 2 cut(s) 401, 468
MaeIII GTNAC 2 cut(s) 69, 102
MalI GATC 4 cut(s) 47, 347, 358, 408
MboI GATC 4 cut(s) 45, 345, 356, 406
MboII GAAGA 5 cut(s) 74, 165, 225, 228, 231
MflI RGATCY 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 373
MluNI TGGCCA 1 cut(s) 373
MnlI CCTC 6 cut(s) 12, 26, 68, 90, 196, 297
Mox20I TGGCCA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 415
Msp20I TGGCCA 1 cut(s) 373
MspI CCGG 3 cut(s) 30, 119, 197
MspR9I CCNGG 3 cut(s) 277, 375, 453
MvaI CCWGG 3 cut(s) 277, 375, 453
MwoI GCNNNNNNNGC 2 cut(s) 327, 379
NdeII GATC 4 cut(s) 45, 345, 356, 406
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 4 cut(s) 149, 167, 308, 408
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 118
PkrI GCNGC 2 cut(s) 173, 296
Ple19I CGATCG 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 275, 373, 451
PspGI CCWGG 3 cut(s) 275, 373, 451
PspN4I GGNNCC 4 cut(s) 149, 167, 308, 408
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 406
PvuI CGATCG 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 415
SatI GCNGC 2 cut(s) 172, 295
Sau3AI GATC 4 cut(s) 45, 345, 356, 406
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 277, 375, 453
SetI ASST 5 cut(s) 78, 254, 296, 323, 469
SmiMI CAYNNNNRTG 1 cut(s) 415
SsiI CCGC 5 cut(s) 43, 169, 172, 200, 378
SspMI CTAG 2 cut(s) 401, 468
StyD4I CCNGG 3 cut(s) 275, 373, 451
TaqI TCGA 2 cut(s) 181, 272
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 139
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 102
XspI CTAG 2 cut(s) 401, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.