Rmu_sc0003005.1_g000013

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003005.1
OG0031042
Physical Location & Seq
Forward (+)
55861 .. 57648
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
atgcatcatcttcaagccataaggtctcctattgcctccaggaatcttctcccagcgccatttttcttcatttttccgatcatatttcctgctatcttcaacgttttctatagggctgggatttggaaccgtaaaaccgaaggaaccgcaccgaaccgcaccgaaagtctcggttcggttcgtcctcgtctcgattgcaaatcctacaaatcaagtaatagaatatcaaaacccagctgcaaccagcaacccgtctccgccagtccgcctctccggtctccgagctccgccttcaggctccaggtagaagagaaacttgagtctggacaggggaagacaactttccgccgtttcttttctagattttgtacaccaatctttttggagtcattcgttctaacatttttagctgagtggggagatcgtagccaaatagcgacaatcgctgtaagatgcgcccttttcatagttcactttactgctgctttatataatcgttttagggatggagaaatctcattagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

175

Amino Acids

19.9

Weight (kDa)

10.46

Isoelectric Point (pI)

67.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 129 - 149 2.8e-06 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031042)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000129.1_g000003 Rmu_sc0003005.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 147, 157, 258, 266, 288, 346
AclI AACGTT 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 14, 100
AjnI CCWGG 2 cut(s) 38, 300
AluBI AGCT 3 cut(s) 237, 285, 410
AluI AGCT 3 cut(s) 237, 285, 410
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 5 cut(s) 30, 173, 194, 259, 282
ApeKI GCWGC 2 cut(s) 237, 482
AspLEI GCGC 2 cut(s) 58, 458
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 224, 469
BccI CCATC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 2 cut(s) 40, 302
BcoDI GTCTC 5 cut(s) 30, 173, 194, 259, 282
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 2 cut(s) 238, 483
BlsI GCNGC 2 cut(s) 239, 484
Bme1390I CCNGG 2 cut(s) 40, 302
BmiI GGNNCC 3 cut(s) 128, 145, 299
BmrFI CCNGG 2 cut(s) 40, 302
BmsI GCATC 2 cut(s) 13, 443
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 2 cut(s) 22, 284
BpuEI CTTGAG 1 cut(s) 338
BsaI GGTCTC 2 cut(s) 30, 282
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 40, 302
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 224, 469
BseYI CCCAGC 3 cut(s) 52, 116, 233
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 5 cut(s) 30, 173, 194, 259, 282
BsmBI CGTCTC 2 cut(s) 194, 259
Bso31I GGTCTC 2 cut(s) 30, 282
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 2 cut(s) 78, 421
BspACI CCGC 6 cut(s) 147, 157, 258, 266, 288, 346
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 128, 145, 299
BspTNI GGTCTC 2 cut(s) 30, 282
BsrGI TGTACA 1 cut(s) 368
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 78, 421
Bst2UI CCWGG 2 cut(s) 40, 302
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 58, 458
BstKTI GATC 2 cut(s) 81, 424
BstMAI GTCTC 5 cut(s) 30, 173, 194, 259, 282
BstMBI GATC 2 cut(s) 78, 421
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 2 cut(s) 40, 302
BstSCI CCNGG 2 cut(s) 38, 300
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 224, 469
BstV2I GAAGAC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 511
CfoI GCGC 2 cut(s) 58, 458
Csp6I GTAC 1 cut(s) 369
CviJI RGCY 7 cut(s) 17, 116, 237, 285, 298, 410, 429
CviKI_1 RGCY 7 cut(s) 17, 116, 237, 285, 298, 410, 429
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 411
DpnI GATC 2 cut(s) 80, 423
DpnII GATC 2 cut(s) 78, 421
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 4 cut(s) 247, 255, 277, 335
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 2 cut(s) 30, 282
Eco53kI GAGCTC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 38, 300
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 287
Esp3I CGTCTC 2 cut(s) 194, 259
FaiI YATR 7 cut(s) 20, 83, 111, 467, 490, 492, 526
FalI AAGNNNNNCTT 2 cut(s) 300, 332
Fnu4HI GCNGC 2 cut(s) 238, 483
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 238, 483
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 57, 457
GluI GCNGC 2 cut(s) 238, 483
GsaI CCCAGC 3 cut(s) 56, 120, 237
GsuI CTGGAG 2 cut(s) 22, 284
HaeII RGCGCY 1 cut(s) 59
HapII CCGG 1 cut(s) 274
HhaI GCGC 2 cut(s) 58, 458
Hin6I GCGC 2 cut(s) 56, 456
HinP1I GCGC 2 cut(s) 56, 456
HinfI GANTC 3 cut(s) 43, 320, 386
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 371, 472
Hpy188I TCNGA 2 cut(s) 78, 282
Hpy188III TCNNGA 3 cut(s) 191, 324, 360
Hpy8I GTNNAC 2 cut(s) 371, 472
HpyAV CCTTC 2 cut(s) 134, 301
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 4, 198, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 102
HspAI GCGC 2 cut(s) 56, 456
Kzo9I GATC 2 cut(s) 78, 421
LmnI GCTCC 2 cut(s) 290, 303
Lsp1109I GCAGC 2 cut(s) 224, 469
LweI GCATC 2 cut(s) 13, 443
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 102
MalI GATC 2 cut(s) 80, 423
MboI GATC 2 cut(s) 78, 421
MboII GAAGA 5 cut(s) 38, 58, 88, 320, 346
MhlI GDGCHC 1 cut(s) 287
MlyI GAGTC 2 cut(s) 329, 395
MnlI CCTC 3 cut(s) 46, 195, 279
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 2 cut(s) 40, 302
MvaI CCWGG 2 cut(s) 40, 302
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 2 cut(s) 78, 421
NlaIV GGNNCC 3 cut(s) 128, 145, 299
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 2 cut(s) 239, 484
PleI GAGTC 2 cut(s) 328, 394
PpsI GAGTC 2 cut(s) 328, 394
Psp124BI GAGCTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 38, 300
PspFI CCCAGC 3 cut(s) 52, 116, 233
PspGI CCWGG 2 cut(s) 38, 300
PspN4I GGNNCC 3 cut(s) 128, 145, 299
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SacI GAGCTC 1 cut(s) 287
SatI GCNGC 2 cut(s) 238, 483
Sau3AI GATC 2 cut(s) 78, 421
SchI GAGTC 2 cut(s) 329, 395
ScrFI CCNGG 2 cut(s) 40, 302
SduI GDGCHC 1 cut(s) 287
SetI ASST 6 cut(s) 26, 105, 239, 287, 306, 412
SfaNI GCATC 2 cut(s) 13, 443
SfcI CTRYAG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SsiI CCGC 6 cut(s) 147, 157, 258, 266, 288, 346
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 38, 300
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 43
TseI GCWGC 2 cut(s) 237, 482
TspDTI ATGAA 2 cut(s) 58, 454
XbaI TCTAGA 1 cut(s) 359
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.