Rmu_sc0003005.1_g000021

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003005.1
N/A
Physical Location & Seq
Reverse (-)
92286 .. 93841
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
atggatatagatacgggtatgtttacggttcctcaaactgttggcagcgtactgtgttgcaaatgtggtattccaatggcaccaaatgctgccaatatgtgcgtcaagtgtttgcgctctgaagttgacattactggaggtttgcagaagcatgtgactattgtgcattgccccgaatgtgatacctactttcagcctccgagaacttggattacagcccaactagaatcgaaagagctcctaactttctgtgtgaagagactgaagaacttgaataaaattagtaatgacgaggaactagacaagtataagggtctagtcattccagatgtaattttgataaagaagagctatgaagaaaagcgcctaaagaagcgtgcaaagcctcgtgcatggaagcgtgcaaagcctcgtgcatggaagcttaaatccctatccatggaagtggatgctaaaggtagaggcgcgctagaaaaggaggcctcagagtatgaacagttcttgaaagatctggaagagaatcctgacttcaggttcaacattgatttgtaccgtgatgaacaataccagccatcagagatagcatctgtgaccgatggggaagatgcaccttctgtgccccttgatgagttgcttgccgacatggataacctccaattaagagagtatgaagatgatgaggacagtggcagcatgagggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
NMD3

Protein Analysis

234

Amino Acids

26.79

Weight (kDa)

5.09

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NMD3 PF04981 19 - 98 2.2e-20 NMD3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 467
AcuI CTGAAG 3 cut(s) 141, 284, 514
AfaI GTAC 2 cut(s) 51, 551
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 3 cut(s) 274, 505, 538
AluBI AGCT 3 cut(s) 238, 351, 424
AluI AGCT 3 cut(s) 238, 351, 424
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 3 cut(s) 45, 89, 690
AspLEI GCGC 4 cut(s) 117, 366, 467, 469
BaeGI GKGCMC 1 cut(s) 621
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 2 cut(s) 387, 411
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 57, 76
BccI CCATC 2 cut(s) 580, 590
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 4 cut(s) 224, 299, 317, 470
BfoI RGCGCY 1 cut(s) 367
BglII AGATCT 1 cut(s) 508
BisI GCNGC 3 cut(s) 46, 90, 691
BlsI GCNGC 3 cut(s) 47, 91, 692
BmiI GGNNCC 2 cut(s) 30, 81
BmsI GCATC 3 cut(s) 439, 593, 595
BpmI CTGGAG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 139
BsePI GCGCGC 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 2 cut(s) 57, 76
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 240, 621
Bsp143I GATC 1 cut(s) 508
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 497
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 2 cut(s) 30, 81
BspQI GCTCTTC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 438
BssHII GCGCGC 1 cut(s) 465
BssMI GATC 1 cut(s) 508
BssSI CACGAG 2 cut(s) 387, 411
BssT1I CCWWGG 1 cut(s) 438
Bst2BI CACGAG 2 cut(s) 387, 411
Bst4CI ACNGT 6 cut(s) 28, 40, 54, 498, 554, 686
Bst6I CTCTTC 3 cut(s) 251, 341, 510
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 378, 402, 467, 636
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 4 cut(s) 117, 366, 467, 469
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 508
BstMWI GCNNNNNNNGC 3 cut(s) 86, 382, 406
BstNSI RCATGY 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 621
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 57, 76
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 691
Cac8I GCNNGC 4 cut(s) 378, 402, 467, 636
CfoI GCGC 4 cut(s) 117, 366, 467, 469
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 50, 550
CviAII CATG 6 cut(s) 152, 393, 417, 439, 643, 694
CviJI RGCY 9 cut(s) 196, 218, 238, 351, 385, 409, 424, 482, 571
CviKI_1 RGCY 9 cut(s) 196, 218, 238, 351, 385, 409, 424, 482, 571
CviQI GTAC 2 cut(s) 50, 550
DdeI CTNAG 1 cut(s) 484
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
Eam1104I CTCTTC 3 cut(s) 251, 341, 510
EarI CTCTTC 3 cut(s) 251, 341, 510
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 3 cut(s) 141, 284, 514
EcoICRI GAGCTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 6 cut(s) 155, 396, 420, 442, 646, 697
FatI CATG 6 cut(s) 151, 392, 416, 438, 642, 693
Fnu4HI GCNGC 3 cut(s) 46, 90, 691
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 46, 90, 691
FspBI CTAG 4 cut(s) 224, 299, 317, 470
GlaI GCGC 4 cut(s) 116, 365, 466, 468
GluI GCNGC 3 cut(s) 46, 90, 691
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 1 cut(s) 482
HgaI GACGC 1 cut(s) 91
HhaI GCGC 4 cut(s) 117, 366, 467, 469
Hin1II CATG 6 cut(s) 155, 396, 420, 442, 646, 697
Hin6I GCGC 4 cut(s) 115, 364, 465, 467
HinP1I GCGC 4 cut(s) 115, 364, 465, 467
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 227, 520
Hpy166II GTNNAC 2 cut(s) 24, 127
Hpy188I TCNGA 4 cut(s) 121, 201, 487, 577
Hpy188III TCNNGA 4 cut(s) 326, 502, 512, 524
Hpy8I GTNNAC 2 cut(s) 24, 127
HpyAV CCTTC 1 cut(s) 621
HpyCH4III ACNGT 6 cut(s) 28, 40, 54, 498, 554, 686
HpyCH4V TGCA 8 cut(s) 60, 145, 166, 380, 392, 404, 416, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 382, 406
HpyF3I CTNAG 1 cut(s) 484
Hsp92II CATG 6 cut(s) 155, 396, 420, 442, 646, 697
HspAI GCGC 4 cut(s) 115, 364, 465, 467
Kzo9I GATC 1 cut(s) 508
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 6 cut(s) 120, 339, 497, 517, 537, 581
Lsp1109I GCAGC 2 cut(s) 57, 76
LweI GCATC 3 cut(s) 439, 593, 595
MaeI CTAG 4 cut(s) 224, 299, 317, 470
MaeIII GTNAC 2 cut(s) 154, 589
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 7 cut(s) 268, 277, 358, 368, 527, 614, 683
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 240, 621
MluCI AATT 3 cut(s) 279, 333, 656
MseI TTAA 2 cut(s) 426, 659
MslI CAYNNNNRTG 1 cut(s) 443
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 3 cut(s) 86, 382, 406
NcoI CCATGG 1 cut(s) 438
NdeII GATC 1 cut(s) 508
NlaIII CATG 6 cut(s) 155, 396, 420, 442, 646, 697
NlaIV GGNNCC 2 cut(s) 30, 81
NmuCI GTSAC 2 cut(s) 154, 589
NspI RCATGY 1 cut(s) 155
PauI GCGCGC 1 cut(s) 465
PceI AGGCCT 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 227, 520
PkrI GCNGC 3 cut(s) 47, 91, 692
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 30, 81
PsrI GAACNNNNNNTAC 4 cut(s) 196, 228, 482, 514
PsuI RGATCY 1 cut(s) 508
PteI GCGCGC 1 cut(s) 465
RsaI GTAC 2 cut(s) 51, 551
RsaNI GTAC 2 cut(s) 50, 550
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 426, 659
SatI GCNGC 3 cut(s) 46, 90, 691
Sau3AI GATC 1 cut(s) 508
SduI GDGCHC 2 cut(s) 240, 621
SetI ASST 9 cut(s) 142, 188, 240, 353, 426, 460, 536, 613, 654
SfaNI GCATC 3 cut(s) 439, 593, 595
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 3 cut(s) 279, 333, 656
SseBI AGGCCT 1 cut(s) 482
SspMI CTAG 4 cut(s) 224, 299, 317, 470
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 482
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 6 cut(s) 28, 40, 54, 498, 554, 686
TaqI TCGA 1 cut(s) 230
TaqII GACCGA 1 cut(s) 608
TasI AATT 3 cut(s) 279, 333, 656
TfiI GAWTC 2 cut(s) 227, 520
Tru1I TTAA 2 cut(s) 426, 659
Tru9I TTAA 2 cut(s) 426, 659
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 2 cut(s) 154, 589
TseI GCWGC 3 cut(s) 45, 89, 690
Tsp45I GTSAC 2 cut(s) 154, 589
TspDTI ATGAA 4 cut(s) 369, 507, 573, 684
TspRI CASTG 1 cut(s) 691
XceI RCATGY 1 cut(s) 155
XspI CTAG 4 cut(s) 224, 299, 317, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.