Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003015.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33818 .. 34270

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcgactagtcacgcagaagtccccggcgagccaacccagaccggaacagccatcctcgaaaccgcaaccgccgccatccaaggcttcggccccgtcaacaagatccaccagcacctctgcgccttccacttctatggccacgacatgacacgtcaggtcgaagcccaccatttctgcgggcaccagaatgaggaggtgcgtcagtgcctcatctacgacagccctgaggccgacgctaagctcatcggcctcgagtacctcgtctcggagagactcttcttgactctccctgacgacgagaagaagctgtggcactctcacgagtatgaggtgaagagtggggttttgttcatgcctggggtgccgggtctgatccagcgtccggatctggacaaggtttgtaagacctatgggaaggtgttccatttttggcaggttagcgacatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0010344 GO:0010876 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1264

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

5.7

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1264	PF06884	30 - 148	1.3e-57	Protein of unknown function (DUF1264)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	2 cut(s)	183, 364
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	4 cut(s)	66, 72, 75, 180
AclWI	GGATC	3 cut(s)	100, 370, 396
AcoI	YGGCCR	1 cut(s)	139
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	193, 268, 385
AflIII	ACRYGT	1 cut(s)	152
AhlI	ACTAGT	1 cut(s)	8
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	244, 310
AluI	AGCT	2 cut(s)	244, 310
Alw26I	GTCTC	2 cut(s)	268, 271
AlwI	GGATC	3 cut(s)	100, 370, 396
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	4 cut(s)	91, 139, 231, 250
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	2 cut(s)	27, 369
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	2 cut(s)	183, 364
BauI	CACGAG	1 cut(s)	323
BccI	CCATC	2 cut(s)	62, 86
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	27, 369
BcoDI	GTCTC	2 cut(s)	268, 271
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	27, 360, 369
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	94, 185, 366
BmrFI	CCNGG	3 cut(s)	27, 360, 369
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	2 cut(s)	27, 369
BsaJI	CCNNGG	3 cut(s)	25, 82, 359
BsaWI	WCCGGW	2 cut(s)	44, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 268, 385
Bse21I	CCTNAGG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	25, 82, 359
BseGI	GGATG	2 cut(s)	54, 78
BseLI	CCNNNNNNNGG	3 cut(s)	193, 268, 385
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	186
BshFI	GGCC	4 cut(s)	93, 141, 233, 252
BshNI	GGYRCC	2 cut(s)	183, 364
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	27, 45, 368, 386
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	193, 268, 385
BsmAI	GTCTC	2 cut(s)	268, 271
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	4 cut(s)	93, 141, 233, 252
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	105, 375, 388
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	4 cut(s)	66, 72, 75, 180
BspANI	GGCC	4 cut(s)	93, 141, 233, 252
BspCNI	CTCAG	1 cut(s)	220
BspEI	TCCGGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	94, 185, 366
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	3 cut(s)	100, 370, 396
BspT107I	GGYRCC	2 cut(s)	183, 364
BssECI	CCNNGG	3 cut(s)	25, 82, 359
BssMI	GATC	3 cut(s)	105, 375, 388
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	284, 332
BstC8I	GCNNGC	2 cut(s)	32, 182
BstDEI	CTNAG	2 cut(s)	228, 240
BstF5I	GGATG	2 cut(s)	54, 78
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	108, 378, 391
BstMAI	GTCTC	2 cut(s)	268, 271
BstMBI	GATC	3 cut(s)	105, 375, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 364
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	3 cut(s)	25, 358, 367
BstSLI	GKGCMC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	105, 388
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	2 cut(s)	105, 388
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	93, 141, 233, 252
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	54, 78
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	32, 182
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	3 cut(s)	191, 245, 371
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	148, 355
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	228, 240
DpnI	GATC	3 cut(s)	107, 377, 390
DpnII	GATC	3 cut(s)	105, 375, 388
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	284, 332
EarI	CTCTTC	2 cut(s)	284, 332
Eco130I	CCWWGG	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	151, 358
FaiI	YATR	5 cut(s)	138, 149, 330, 356, 414
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	147, 354
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	41, 65
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	93, 141, 233, 252
HapII	CCGG	4 cut(s)	27, 45, 368, 386
HgaI	GACGC	3 cut(s)	191, 245, 371
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	151, 358
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	276, 286
HpaII	CCGG	4 cut(s)	27, 45, 368, 386
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	271, 375
Hpy188III	TCNNGA	4 cut(s)	283, 323, 386, 392
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	239, 302
HpyAV	CCTTC	2 cut(s)	136, 412
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 364
HpyF3I	CTNAG	2 cut(s)	228, 240
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	151, 358
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	105, 375, 388
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	107, 377, 390
MboI	GATC	3 cut(s)	105, 375, 388
MboII	GAAGA	3 cut(s)	271, 316, 349
MflI	RGATCY	2 cut(s)	105, 388
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	270, 280
MnlI	CCTC	9 cut(s)	68, 128, 187, 190, 221, 223, 263, 272, 325
Mox20I	TGGCCA	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	3 cut(s)	135, 189, 327
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	4 cut(s)	27, 45, 368, 386
MspR9I	CCNGG	3 cut(s)	27, 360, 369
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	74, 364
NciI	CCSGG	2 cut(s)	27, 369
NdeII	GATC	3 cut(s)	105, 375, 388
NlaIII	CATG	2 cut(s)	151, 358
NlaIV	GGNNCC	3 cut(s)	94, 185, 366
NmuCI	GTSAC	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	270, 280
PpsI	GAGTC	2 cut(s)	270, 280
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	94, 185, 366
PspPI	GGNCC	1 cut(s)	92
PspXI	VCTCGAGB	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	105, 388
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	3 cut(s)	135, 189, 327
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	105, 375, 388
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	270, 280
ScrFI	CCNGG	3 cut(s)	27, 360, 369
SduI	GDGCHC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	135, 189, 327
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	8
SsiI	CCGC	4 cut(s)	66, 72, 75, 180
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	25, 358, 367
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	60, 162, 255
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.