Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003025.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 538

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

atggtggcggaacttaccacattccacagaccaaaattcggagccctattacagtccgatccaaacataccatccccaaatacacacaataacagtgacaaagagcacagcgtatatagctcatccgtgagccccggttactacgacaacaacagcagcaacgtgcgcagctcagccatgagccccggttattacgacaacaaccccttcagctcctccgccagtcccgggtactacgacaacgcacgtgcgatgtccgtgagcccggccacaactctggggttctacgacgacaacaacaacgtgcagggcagcagcgtcggttcaactccatacgccatgtcgccgtggaaccatgagtcaccgtacaacaagtcgccgtggatagcgccatcgccgataaacccgttgatggacgagaggtgcttgcctgagagcgggcttgttgggtcgttggtacgagaacaagggcatatatattcgctagcggtgagcggagacttgttgtataccgggtcggata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

174

Amino Acids

18.83

Weight (kDa)

4.86

Isoelectric Point (pI)

81.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccBSI	CCGCTC	2 cut(s)	438, 495
AccI	GTMKAC	1 cut(s)	509
AciI	CCGC	5 cut(s)	8, 219, 438, 488, 495
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	193
AcvI	CACGTG	1 cut(s)	248
AfaI	GTAC	3 cut(s)	233, 368, 459
AfiI	CCNNNNNNNGG	4 cut(s)	38, 228, 412, 437
AgsI	TTSAA	1 cut(s)	327
AluBI	AGCT	3 cut(s)	120, 171, 213
AluI	AGCT	3 cut(s)	120, 171, 213
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	4 cut(s)	156, 168, 312, 315
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	168, 391
AsuC2I	CCSGG	6 cut(s)	135, 186, 228, 229, 266, 514
AsuHPI	GGTGA	2 cut(s)	354, 502
AsuNHI	GCTAGC	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	227
BanII	GRGCYC	4 cut(s)	46, 134, 185, 266
BbrPI	CACGTG	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	168, 180, 324, 327
BccI	CCATC	3 cut(s)	79, 400, 406
BceAI	ACGGC	2 cut(s)	331, 364
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BcnI	CCSGG	6 cut(s)	135, 186, 228, 229, 266, 514
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	4 cut(s)	157, 169, 313, 316
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	4 cut(s)	158, 170, 314, 317
Bme1390I	CCNGG	6 cut(s)	135, 186, 228, 229, 266, 514
BmeT110I	CYCGRG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	43, 353
BmrFI	CCNGG	6 cut(s)	135, 186, 228, 229, 266, 514
BmtI	GCTAGC	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	172
BpuMI	CCSGG	6 cut(s)	135, 186, 228, 229, 266, 514
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	133, 184, 227, 347, 380
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 228, 412, 437
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	5 cut(s)	133, 184, 227, 347, 380
BseGI	GGATG	2 cut(s)	71, 122
BseLI	CCNNNNNNNGG	4 cut(s)	38, 228, 412, 437
BseMII	CTCAG	2 cut(s)	186, 423
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	168, 180, 324, 327
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	5 cut(s)	135, 186, 228, 266, 513
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	38, 228, 412, 437
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	5 cut(s)	46, 108, 134, 185, 266
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	172
BspACI	CCGC	5 cut(s)	8, 219, 438, 488, 495
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	185, 424
BspLI	GGNNCC	2 cut(s)	43, 353
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	53
BsrBI	CCGCTC	2 cut(s)	438, 495
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	5 cut(s)	133, 184, 227, 347, 380
BssMI	GATC	1 cut(s)	58
BssNAI	GTATAC	1 cut(s)	510
Bst1107I	GTATAC	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	54, 95, 366
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	428, 440, 486
BstDEI	CTNAG	2 cut(s)	172, 432
BstDSI	CCRYGG	2 cut(s)	347, 380
BstF5I	GGATG	2 cut(s)	71, 122
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	168, 391
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 165
BstSCI	CCNGG	6 cut(s)	133, 184, 226, 227, 264, 512
BstV1I	GCAGC	4 cut(s)	168, 180, 324, 327
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstZ17I	GTATAC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	2 cut(s)	347, 380
BtgZI	GCGATG	2 cut(s)	266, 378
BtsCI	GGATG	2 cut(s)	71, 122
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	428, 440, 486
CfoI	GCGC	2 cut(s)	168, 391
Cfr9I	CCCGGG	1 cut(s)	227
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	232, 367, 458
CviAII	CATG	3 cut(s)	178, 340, 356
CviQI	GTAC	3 cut(s)	232, 367, 458
DdeI	CTNAG	2 cut(s)	172, 432
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	267
EciI	GGCGGA	2 cut(s)	23, 208
Eco24I	GRGCYC	4 cut(s)	46, 134, 185, 266
Eco57I	CTGAAG	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	227
EcoT38I	GRGCYC	4 cut(s)	46, 134, 185, 266
FaeI	CATG	3 cut(s)	181, 343, 359
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	3 cut(s)	177, 339, 355
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	4 cut(s)	157, 169, 313, 316
FokI	GGATG	2 cut(s)	58, 109
FriOI	GRGCYC	4 cut(s)	46, 134, 185, 266
Fsp4HI	GCNGC	4 cut(s)	157, 169, 313, 316
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	2 cut(s)	167, 390
GluI	GCNGC	4 cut(s)	157, 169, 313, 316
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	5 cut(s)	135, 186, 228, 266, 513
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	2 cut(s)	168, 391
Hin1II	CATG	3 cut(s)	181, 343, 359
Hin6I	GCGC	2 cut(s)	166, 389
HinP1I	GCGC	2 cut(s)	166, 389
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	5 cut(s)	135, 186, 228, 266, 513
HphI	GGTGA	2 cut(s)	354, 502
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	41, 58, 520
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	2 cut(s)	293, 323
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	54, 95, 366
HpyCH4IV	ACGT	3 cut(s)	162, 247, 303
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 165
HpyF3I	CTNAG	2 cut(s)	172, 432
HpySE526I	ACGT	3 cut(s)	162, 247, 303
Hsp92II	CATG	3 cut(s)	181, 343, 359
HspAI	GCGC	2 cut(s)	166, 389
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	41, 218
LpnPI	CCDG	8 cut(s)	148, 199, 235, 241, 263, 279, 293, 444
Lsp1109I	GCAGC	4 cut(s)	168, 180, 324, 327
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	3 cut(s)	162, 247, 303
MaeIII	GTNAC	3 cut(s)	95, 137, 360
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	2 cut(s)	438, 495
MboI	GATC	1 cut(s)	58
MhlI	GDGCHC	5 cut(s)	46, 108, 134, 185, 266
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	2 cut(s)	226, 414
MspI	CCGG	5 cut(s)	135, 186, 228, 266, 513
MspR9I	CCNGG	6 cut(s)	135, 186, 228, 229, 266, 514
MwoI	GCNNNNNNNGC	2 cut(s)	117, 165
NciI	CCSGG	6 cut(s)	135, 186, 228, 229, 266, 514
NdeII	GATC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	181, 343, 359
NlaIV	GGNNCC	2 cut(s)	43, 353
NmuCI	GTSAC	2 cut(s)	95, 360
NsbI	TGCGCA	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	158, 170, 314, 317
PleI	GAGTC	1 cut(s)	367
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	248
PspCI	CACGTG	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	43, 353
RsaI	GTAC	3 cut(s)	233, 368, 459
RsaNI	GTAC	3 cut(s)	232, 367, 458
SatI	GCNGC	4 cut(s)	157, 169, 313, 316
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	6 cut(s)	135, 186, 228, 229, 266, 514
SduI	GDGCHC	5 cut(s)	46, 108, 134, 185, 266
SetI	ASST	7 cut(s)	122, 165, 173, 215, 250, 306, 425
SmaI	CCCGGG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	5 cut(s)	8, 219, 438, 488, 495
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	6 cut(s)	133, 184, 226, 227, 264, 512
TaaI	ACNGT	3 cut(s)	54, 95, 366
TaiI	ACGT	3 cut(s)	165, 250, 306
TasI	AATT	1 cut(s)	35
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	95, 360
TseI	GCWGC	4 cut(s)	156, 168, 312, 315
Tsp45I	GTSAC	2 cut(s)	95, 360
TspGWI	ACGGA	2 cut(s)	115, 247
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.