Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

45020 .. 45517

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggagacgatcaaagagagccacaaccagaaaaagcttcttcacatagccatgttcccatggctagcctacggccatgtcatgccgtttcttcaactgtccaagttcctagctcaaaagggtcatcgcatatccttcatctccacccctaaaaacctccaccgcctcccaacctcctcatccctatccccactcatcaaactcatcgagcttccaatgcccgtcgtcgacggccttccggagtcggcggagtccacctccgacgtgcccgtcaacaaagtcccgtacctgaaaaaagcctacgacaagctcgagctccctctcacgcattgcctcgaagacttggcggtgaactggatcgtcatcgatttcgcgtcccactggcttccccgagttgcgactcggctggggatcaactcggtttacttcaccattttcaatgctaccaccatggccttcgtgggcccgccgtcagagatactcggtggcgaacgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

8.69

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	374
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	4 cut(s)	163, 248, 347, 467
AclWI	GGATC	2 cut(s)	365, 419
AcoI	YGGCCR	1 cut(s)	73
AfaI	GTAC	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	95, 439
AjiI	CACGTC	1 cut(s)	265
AluBI	AGCT	5 cut(s)	37, 113, 211, 310, 316
AluI	AGCT	5 cut(s)	37, 113, 211, 310, 316
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	365, 419
Ama87I	CYCGRG	2 cut(s)	311, 390
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	4 cut(s)	73, 232, 453, 463
ApaI	GGGCCC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	463, 464
AsuHPI	GGTGA	2 cut(s)	361, 421
AsuNHI	GCTAGC	1 cut(s)	64
AvaI	CYCGRG	2 cut(s)	311, 390
BaeGI	GKGCMC	2 cut(s)	270, 467
BanII	GRGCYC	2 cut(s)	318, 467
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	318
BceAI	ACGGC	4 cut(s)	70, 88, 247, 454
BfaI	CTAG	3 cut(s)	65, 110, 496
BmeT110I	CYCGRG	2 cut(s)	311, 390
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	463, 464
BmiI	GGNNCC	1 cut(s)	465
BmtI	GCTAGC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	59, 450
BsaWI	WCCGGW	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	359, 386
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	362
BseAI	TCCGGA	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	59, 450
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	359, 386
BseRI	GAGGAG	1 cut(s)	166
BseSI	GKGCMC	2 cut(s)	270, 467
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	75, 234, 455, 465
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	2 cut(s)	311, 390
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	266, 361
BsmFI	GGGAC	2 cut(s)	266, 361
BsnI	GGCC	4 cut(s)	75, 234, 455, 465
BsoBI	CYCGRG	2 cut(s)	311, 390
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	270, 318, 467
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	9, 357, 411
Bsp19I	CCATGG	2 cut(s)	59, 450
BspACI	CCGC	4 cut(s)	163, 248, 347, 467
BspANI	GGCC	4 cut(s)	75, 234, 455, 465
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	365, 419
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	359, 386
BssECI	CCNNGG	2 cut(s)	59, 450
BssMI	GATC	3 cut(s)	9, 357, 411
BssT1I	CCWWGG	2 cut(s)	59, 450
Bst4CI	ACNGT	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	66, 467
BstDSI	CCRYGG	2 cut(s)	59, 450
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	12, 360, 414
BstMBI	GATC	3 cut(s)	9, 357, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstSLI	GKGCMC	2 cut(s)	270, 467
BstUI	CGCG	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	75, 234, 455, 465
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	2 cut(s)	59, 450
BtgZI	GCGATG	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	66, 467
Cfr13I	GGNCC	2 cut(s)	463, 464
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	5 cut(s)	52, 60, 77, 82, 451
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	11, 359, 413
DpnII	GATC	3 cut(s)	9, 357, 411
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	59, 450
Eco24I	GRGCYC	2 cut(s)	318, 467
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	311, 390
EcoICRI	GAGCTC	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	59, 450
EcoT38I	GRGCYC	2 cut(s)	318, 467
ErhI	CCWWGG	2 cut(s)	59, 450
FaeI	CATG	5 cut(s)	55, 63, 80, 85, 454
FaiI	YATR	7 cut(s)	47, 53, 61, 78, 83, 131, 452
FaqI	GGGAC	2 cut(s)	266, 361
FatI	CATG	5 cut(s)	51, 59, 76, 81, 450
FauI	CCCGC	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	2 cut(s)	318, 467
FspBI	CTAG	3 cut(s)	65, 110, 496
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	4 cut(s)	75, 234, 455, 465
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	55, 63, 80, 85, 454
HincII	GTYRAC	2 cut(s)	229, 274
HindII	GTYRAC	2 cut(s)	229, 274
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	242, 251, 400
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	361, 421
Hpy166II	GTNNAC	5 cut(s)	229, 255, 274, 352, 424
Hpy188I	TCNGA	2 cut(s)	262, 475
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	5 cut(s)	229, 255, 274, 352, 424
Hpy99I	CGWCG	4 cut(s)	227, 230, 233, 266
HpyAV	CCTTC	3 cut(s)	145, 245, 466
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	55, 63, 80, 85, 454
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	9, 357, 411
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	41, 252, 302, 340, 367, 392
MaeI	CTAG	3 cut(s)	65, 110, 496
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	11, 359, 413
MboI	GATC	3 cut(s)	9, 357, 411
MboII	GAAGA	3 cut(s)	32, 83, 350
MhlI	GDGCHC	3 cut(s)	270, 318, 467
MlyI	GAGTC	3 cut(s)	251, 260, 394
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	167, 176, 184, 187, 268, 330, 344
MroI	TCCGGA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	217
NcoI	CCATGG	2 cut(s)	59, 450
NdeII	GATC	3 cut(s)	9, 357, 411
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	55, 63, 80, 85, 454
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PleI	GAGTC	3 cut(s)	250, 259, 394
PpsI	GAGTC	3 cut(s)	250, 259, 394
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	463, 464
PspXI	VCTCGAGB	1 cut(s)	311
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	9, 357, 411
Sau96I	GGNCC	2 cut(s)	463, 464
SchI	GAGTC	3 cut(s)	251, 260, 394
SduI	GDGCHC	3 cut(s)	270, 318, 467
Sfr274I	CTCGAG	1 cut(s)	311
SgrDI	CGTCGACG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	4 cut(s)	163, 248, 347, 467
SspMI	CTAG	3 cut(s)	65, 110, 496
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	59, 450
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	5 cut(s)	207, 228, 312, 336, 366
TscAI	CASTG	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	3 cut(s)	65, 110, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.