Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

68570 .. 69889

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgggtgataacaattctccacctggctcttctaaagaagctgatcatgattccgatgctaacgcgcttgttaaggatgatagctcattggaaacgattgttcgaaagttccaagattcaatgtctgttgggaagaggcacgcattttgggagacccagcctgtggggcagttcaaggatcttggtgatgtgagtctgccggagggcccgattgagcctcccacaccattgtctgaggtcaagcaagagccgtacaatctgcccagtcagtatgagtggaccacttgtgatttggactcggaagacacctgcactgaggtctacaatctgttgaagaacaattatgttgaggatgatgagaacatgttcaggttcaattactccaaggagtttcttaggtgggctttgcaccctcctggttattataggagctggcatattggggttcgtgcaaagacgaataagaagctggttgctttcattactgctggctataaaggttccatttcacctgtacttgtgaatcactatgtaactgaagcccctagcttcactggaaagctgcagttctttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

192

Amino Acids

21.81

Weight (kDa)

4.94

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NMT	PF01233	70 - 163	1.2e-39	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	65
AclWI	GGATC	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	254, 516
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	120, 175, 334, 376
AjnI	CCWGG	2 cut(s)	22, 415
AluBI	AGCT	6 cut(s)	41, 84, 432, 469, 549, 562
AluI	AGCT	6 cut(s)	41, 84, 432, 469, 549, 562
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	205
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	205, 206, 279
AsuHPI	GGTGA	3 cut(s)	17, 197, 501
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	549
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	24, 417
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
Bme1390I	CCNGG	2 cut(s)	24, 417
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	3 cut(s)	205, 206, 279
BmiI	GGNNCC	2 cut(s)	207, 502
BmrFI	CCNGG	2 cut(s)	24, 417
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	264, 559
BseBI	CCWGG	2 cut(s)	24, 417
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	82, 358
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	225, 306
BseNI	ACTGG	2 cut(s)	264, 559
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	549
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	103
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	43, 178
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	226, 307
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	207, 502
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	264, 559
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	43, 178
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	24, 417
Bst6I	CTCTTC	2 cut(s)	34, 128
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	141, 434, 490
BstDEI	CTNAG	3 cut(s)	234, 315, 395
BstF5I	GGATG	2 cut(s)	82, 358
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	46, 181
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	43, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	24, 417
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	22, 415
BstSFI	CTRYAG	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	82, 358
BtsIMutI	CAGTG	2 cut(s)	312, 552
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	3 cut(s)	141, 434, 490
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	205, 206, 279
Csp6I	GTAC	2 cut(s)	253, 515
CviAII	CATG	2 cut(s)	47, 364
CviQI	GTAC	2 cut(s)	253, 515
DdeI	CTNAG	3 cut(s)	234, 315, 395
DpnI	GATC	2 cut(s)	45, 180
DpnII	GATC	2 cut(s)	43, 178
Eam1104I	CTCTTC	2 cut(s)	34, 128
EarI	CTCTTC	2 cut(s)	34, 128
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	22, 415
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	50, 367
FaiI	YATR	8 cut(s)	48, 273, 345, 365, 426, 438, 495, 531
FatI	CATG	2 cut(s)	46, 363
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	2 cut(s)	89, 365
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	563
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	563
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	50, 367
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	5 cut(s)	50, 116, 193, 296, 523
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	17, 197, 501
Hpy166II	GTNNAC	2 cut(s)	279, 322
Hpy188I	TCNGA	3 cut(s)	55, 235, 301
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	279, 322
HpyCH4V	TGCA	4 cut(s)	312, 409, 452, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	234, 315, 395
Hsp92II	CATG	2 cut(s)	50, 367
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	43, 178
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	1 cut(s)	549
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	2 cut(s)	45, 180
MboI	GATC	2 cut(s)	43, 178
MboII	GAAGA	4 cut(s)	21, 145, 314, 346
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	3 cut(s)	13, 340, 376
MlyI	GAGTC	2 cut(s)	202, 290
MnlI	CCTC	7 cut(s)	129, 196, 228, 229, 310, 343, 423
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	72, 577
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	24, 417
MvaI	CCWGG	2 cut(s)	24, 417
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	43, 178
NlaIII	CATG	2 cut(s)	50, 367
NlaIV	GGNNCC	2 cut(s)	207, 502
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	317
PciI	ACATGT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	50, 116, 523
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	564
PleI	GAGTC	2 cut(s)	201, 290
PpsI	GAGTC	2 cut(s)	201, 290
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	22, 415
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	22, 415
PspN4I	GGNNCC	2 cut(s)	207, 502
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	205, 206, 279
PstI	CTGCAG	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	254, 516
RsaNI	GTAC	2 cut(s)	253, 515
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	72, 577
SatI	GCNGC	1 cut(s)	563
Sau3AI	GATC	2 cut(s)	43, 178
Sau96I	GGNCC	3 cut(s)	205, 206, 279
SchI	GAGTC	2 cut(s)	202, 290
ScrFI	CCNGG	2 cut(s)	24, 417
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	563
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	13, 340, 376
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	22, 415
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	13, 340, 376
TatI	WGTACW	1 cut(s)	514
TfiI	GAWTC	3 cut(s)	50, 116, 523
Tru1I	TTAA	2 cut(s)	72, 577
Tru9I	TTAA	2 cut(s)	72, 577
TscAI	CASTG	2 cut(s)	319, 559
TseI	GCWGC	1 cut(s)	562
TspDTI	ATGAA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	319, 559
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.