Rmu_sc0003027.1_g000021

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003027.1
N/A
Physical Location & Seq
Forward (+)
73754 .. 74320
567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
atgatttggattttagagactcaaatccaaatcctcaactacaattccctatatccaaacgggaccttagattttatatccaaaaataaaattagtagctccactccaaaatttaaatccaacccaacgatagttgtgcacactctgggcccaacccgattgtccagcccaattacttccagtgatctgtgtcatagcattcgtcgcgttttgatttcggctccggagtcagtgaggttcaccgttcacaaagctcaaaactccgccgtagcccaaatcaccatgtgcggcgacgcaaggaactgggacgaagaagcctacagggaaaccattctaaaggagcgagagatccaaacccgaaccgttttccgaaccgcctgggctccctcccttaacccaaaccccgacaccatcgtcgtcgcctctagcgatggatccgtttcttcctactccatccctcacctcgtctccaagctcgtacctacttcattttccctttgtttctcattttcaatattattaattttatcatttgctgaattgaattgctttggttgcagccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

8.31

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 3 cut(s) 264, 288, 375
AclWI GGATC 3 cut(s) 343, 429, 442
AcsI RAATTY 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 285
AfaI GTAC 1 cut(s) 480
AgsI TTSAA 2 cut(s) 513, 544
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 3 cut(s) 99, 254, 475
AluI AGCT 3 cut(s) 99, 254, 475
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 11, 472
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 3 cut(s) 343, 429, 442
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 1 cut(s) 148
ApaI GGGCCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 110
AseI ATTAAT 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 63, 148, 149
AsuHPI GGTGA 3 cut(s) 232, 271, 452
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 2 cut(s) 141, 152
BamHI GGATCC 1 cut(s) 434
BanII GRGCYC 2 cut(s) 152, 385
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 3 cut(s) 419, 425, 461
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 11, 472
BfaI CTAG 2 cut(s) 426, 565
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 2 cut(s) 289, 559
BlsI GCNGC 2 cut(s) 290, 560
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 3 cut(s) 63, 148, 149
BmiI GGNNCC 5 cut(s) 64, 150, 222, 384, 436
BmrFI CCNGG 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bse1I ACTGG 2 cut(s) 180, 308
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 180, 308
BseSI GKGCMC 2 cut(s) 141, 152
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 2 cut(s) 76, 320
BsmAI GTCTC 2 cut(s) 11, 472
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 76, 320
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 1 cut(s) 150
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 141, 152, 385
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 3 cut(s) 184, 348, 434
BspACI CCGC 3 cut(s) 264, 288, 375
BspANI GGCC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 5 cut(s) 64, 150, 222, 384, 436
BspPI GGATC 3 cut(s) 343, 429, 442
BsrI ACTGG 2 cut(s) 180, 308
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 184, 348, 434
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 244, 364
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 3 cut(s) 187, 351, 437
BstMAI GTCTC 2 cut(s) 11, 472
BstMBI GATC 3 cut(s) 184, 348, 434
BstMWI GCNNNNNNNGC 2 cut(s) 204, 555
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 319
BstSLI GKGCMC 2 cut(s) 141, 152
BstUI CGCG 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 348, 434
BstYI RGATCY 2 cut(s) 348, 434
BsuRI GGCC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 187, 237
Cfr13I GGNCC 3 cut(s) 63, 148, 149
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 479
CviAII CATG 1 cut(s) 283
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 67
DpnI GATC 3 cut(s) 186, 350, 436
DpnII GATC 3 cut(s) 184, 348, 434
DraI TTTAAA 1 cut(s) 115
DraIII CACNNNGTG 1 cut(s) 285
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EciI GGCGGA 1 cut(s) 253
Eco24I GRGCYC 2 cut(s) 152, 385
Eco47I GGWCC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 377
EcoT38I GRGCYC 2 cut(s) 152, 385
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 52, 77, 195, 284
FaqI GGGAC 2 cut(s) 76, 320
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 289, 559
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 152, 385
Fsp4HI GCNGC 2 cut(s) 289, 559
FspBI CTAG 2 cut(s) 426, 565
GluI GCNGC 2 cut(s) 289, 559
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 286
HinfI GANTC 2 cut(s) 19, 227
HpaII CCGG 1 cut(s) 224
HphI GGTGA 3 cut(s) 232, 271, 452
Hpy166II GTNNAC 3 cut(s) 139, 240, 247
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 3 cut(s) 139, 240, 247
Hpy99I CGWCG 4 cut(s) 207, 296, 419, 422
HpyCH4III ACNGT 2 cut(s) 244, 364
HpyCH4V TGCA 2 cut(s) 139, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 555
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 286
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 184, 348, 434
LmnI GCTCC 4 cut(s) 104, 226, 340, 388
LpnPI CCDG 8 cut(s) 131, 178, 193, 237, 289, 307, 364, 391
MaeI CTAG 2 cut(s) 426, 565
MalI GATC 3 cut(s) 186, 350, 436
MboI GATC 3 cut(s) 184, 348, 434
MboII GAAGA 2 cut(s) 323, 435
MflI RGATCY 2 cut(s) 348, 434
MhlI GDGCHC 3 cut(s) 141, 152, 385
MluCI AATT 7 cut(s) 43, 90, 110, 171, 522, 539, 544
MlyI GAGTC 2 cut(s) 13, 236
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 6 cut(s) 44, 228, 397, 433, 468, 473
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 3 cut(s) 114, 393, 521
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 204, 555
NdeII GATC 3 cut(s) 184, 348, 434
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 5 cut(s) 64, 150, 222, 384, 436
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 290, 560
PleI GAGTC 2 cut(s) 13, 235
PpsI GAGTC 2 cut(s) 13, 235
PpuMI RGGWCCY 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 5 cut(s) 64, 150, 222, 384, 436
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 3 cut(s) 63, 148, 149
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 2 cut(s) 348, 434
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SaqAI TTAA 3 cut(s) 114, 393, 521
SatI GCNGC 2 cut(s) 289, 559
Sau3AI GATC 3 cut(s) 184, 348, 434
Sau96I GGNCC 3 cut(s) 63, 148, 149
SchI GAGTC 2 cut(s) 13, 236
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 3 cut(s) 141, 152, 385
SetI ASST 7 cut(s) 68, 101, 239, 256, 465, 477, 484
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 63
SmiI ATTTAAAT 1 cut(s) 115
Sse9I AATT 7 cut(s) 43, 90, 110, 171, 522, 539, 544
SsiI CCGC 3 cut(s) 264, 288, 375
SspI AATATT 1 cut(s) 516
SspMI CTAG 2 cut(s) 426, 565
StyD4I CCNGG 1 cut(s) 377
SwaI ATTTAAAT 1 cut(s) 115
TaaI ACNGT 2 cut(s) 244, 364
TasI AATT 7 cut(s) 43, 90, 110, 171, 522, 539, 544
TauI GCSGC 1 cut(s) 291
Tru1I TTAA 3 cut(s) 114, 393, 521
Tru9I TTAA 3 cut(s) 114, 393, 521
TscAI CASTG 2 cut(s) 187, 237
TseI GCWGC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 2 cut(s) 187, 237
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 63
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 426, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.