Rmu_sc0003031.1_g000004

Heme oxygenase 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003031.1
N/A
Physical Location & Seq
Forward (+)
18914 .. 24352
5439 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
atgggtaggaatgaattgactgaagatgcgagaccatctcctcgagctggaggcgaaggcgacattgatgctggagaagcaaggtggcatcgatgttggaggcggagccagattagggttttggaacagaatggagaagtggagagtggcggcttggtcgtcttcgacgtggacttgggactctcctggcaagagctgggccccgttcacaagagggaacaatccgccaataaagttgttgttgtttttttatctgaggttgttgttgatgtttcctccgaggctagtgaagaaggggacattgttattgttgatgataccattgttgttgttgttttggggaatgccattattcccgccttggacaactacctcattgggtttggcaaagggcacttggccattgacagctgggttgatgctgagtttagagatactggattgaaaaggtctgaaaagttggcaaaagatttggagtggttcaaggagcaaggccatgccataccagaaccttctgctcctagtgtaaactatgcttag
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

19.65

Weight (kDa)

4.63

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 103, 150, 225, 357
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 47, 115
AgsI TTSAA 2 cut(s) 445, 484
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 3 cut(s) 47, 196, 411
AluI AGCT 3 cut(s) 47, 196, 411
Alw26I GTCTC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 3 cut(s) 199, 399, 493
ApaI GGGCCC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 199, 200
AvaI CYCGRG 1 cut(s) 42
BaeGI GKGCMC 2 cut(s) 203, 396
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BalI TGGCCA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 154
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 2 cut(s) 285, 522
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 199, 200
BmiI GGNNCC 3 cut(s) 107, 201, 202
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 4 cut(s) 16, 58, 97, 409
BpiI GAAGAC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpmI CTGGAG 2 cut(s) 69, 93
Bsa29I ATCGAT 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 279, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 115
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 279, 360
BseLI CCNNNNNNNGG 2 cut(s) 47, 115
BseMII CTCAG 2 cut(s) 246, 414
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 203, 396
BseYI CCCAGC 2 cut(s) 196, 411
BshFI GGCC 3 cut(s) 201, 401, 495
BshVI ATCGAT 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 192, 311
BslI CCNNNNNNNGG 2 cut(s) 47, 115
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 2 cut(s) 192, 311
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 3 cut(s) 201, 401, 495
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 42
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 203, 396
BspACI CCGC 4 cut(s) 103, 150, 225, 357
BspANI GGCC 3 cut(s) 201, 401, 495
BspCNI CTCAG 2 cut(s) 247, 415
BspDI ATCGAT 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 107, 201, 202
BspTNI GGTCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 279, 360
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 255, 423, 537
BstMAI GTCTC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSLI GKGCMC 2 cut(s) 203, 396
BstV2I GAAGAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 3 cut(s) 201, 401, 495
BsuTUI ATCGAT 1 cut(s) 91
BtrI CACGTC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 199, 200
ClaI ATCGAT 1 cut(s) 91
CviAII CATG 1 cut(s) 497
CviJI RGCY 9 cut(s) 47, 108, 153, 196, 201, 284, 401, 411, 495
CviKI_1 RGCY 9 cut(s) 47, 108, 153, 196, 201, 284, 401, 411, 495
DdeI CTNAG 3 cut(s) 255, 423, 537
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 2 cut(s) 118, 214
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 1 cut(s) 500
FaiI YATR 3 cut(s) 498, 503, 534
FaqI GGGAC 2 cut(s) 192, 311
FatI CATG 1 cut(s) 496
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 285, 522
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 2 cut(s) 200, 415
GsuI CTGGAG 2 cut(s) 69, 93
HaeIII GGCC 3 cut(s) 201, 401, 495
Hin1II CATG 1 cut(s) 500
HinfI GANTC 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 172, 208, 529
Hpy188I TCNGA 3 cut(s) 256, 280, 454
Hpy8I GTNNAC 3 cut(s) 172, 208, 529
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 50, 287, 522
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 3 cut(s) 255, 423, 537
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 500
LmnI GCTCC 3 cut(s) 105, 487, 523
LpnPI CCDG 9 cut(s) 33, 57, 122, 172, 182, 199, 397, 423, 519
LweI GCATC 4 cut(s) 16, 58, 97, 409
MaeI CTAG 2 cut(s) 285, 522
MaeII ACGT 1 cut(s) 168
MboII GAAGA 3 cut(s) 35, 154, 302
MhlI GDGCHC 2 cut(s) 203, 396
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 8 cut(s) 44, 51, 93, 207, 250, 274, 286, 383
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 77
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 3 cut(s) 107, 201, 202
PaeR7I CTCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 2 cut(s) 196, 411
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 107, 201, 202
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 199, 200
PspXI VCTCGAGB 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 411
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 199, 200
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 2 cut(s) 203, 396
SetI ASST 9 cut(s) 49, 86, 171, 198, 261, 375, 413, 452, 514
SfaNI GCATC 4 cut(s) 16, 58, 97, 409
Sfr274I CTCGAG 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 1 cut(s) 14
SsiI CCGC 4 cut(s) 103, 150, 225, 357
SspMI CTAG 2 cut(s) 285, 522
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 43, 91, 165
TasI AATT 1 cut(s) 14
TauI GCSGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 42
XspI CTAG 2 cut(s) 285, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.