Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

98624 .. 99801

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcgatgagcgtgagagaagagatggagaagctgagcgtggagcagttgaaggcagtgaaagagcaaactgatctggaggtcaatcttctccaggactctctcaacaacatccgcacctccaccacccgcctcgagctcgccacctccgccctccacgacctctccctccgacccaccggcaaaaagatgctcgtccctcttaccgcctccctttacgtccccggaactctccaggaccccgaccaggactctctcaacaacatccgcacctccaccacccgcctcgagctcgccacctccgccctccacgacctctccctccgacccaccggcaaaaagatgctcgtccctcttaccgcctccctttacgtccccggaactctccaggaccccgaccaggtcctcgtcgacatcggcaccggctacttcatcgagaagaacatgcctcaagccaaagactactacgaccgcaagatcaatctcctcaagtccaatttcgaacaactcgttgaggttgcttctaagaagaaaagcatatctgatgaagctgggttagttttgcaagcaaaactgaagcagatggctcctacagcacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

200

Amino Acids

22.18

Weight (kDa)

6.16

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	27 - 83	6.1e-09	Prefoldin subunit
Prefoldin	PF02996	83 - 193	4.3e-27	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	9 cut(s)	115, 130, 150, 207, 268, 283, 303, 360, 472
AcuI	CTGAAG	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	247, 400
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	5 cut(s)	93, 234, 246, 387, 399
AluBI	AGCT	4 cut(s)	34, 139, 292, 551
AluI	AGCT	4 cut(s)	34, 139, 292, 551
Alw21I	GWGCWC	2 cut(s)	141, 294
Ama87I	CYCGRG	2 cut(s)	134, 287
AspS9I	GGNCC	3 cut(s)	238, 391, 403
AsuC2I	CCSGG	2 cut(s)	225, 378
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	2 cut(s)	134, 287
AvaII	GGWCC	3 cut(s)	238, 391, 403
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	141, 294
Bbv12I	GWGCWC	2 cut(s)	141, 294
BccI	CCATC	2 cut(s)	19, 577
BciT130I	CCWGG	5 cut(s)	95, 236, 248, 389, 401
BcnI	CCSGG	2 cut(s)	225, 378
BfmI	CTRYAG	1 cut(s)	591
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	7 cut(s)	95, 225, 236, 248, 378, 389, 401
Bme18I	GGWCC	3 cut(s)	238, 391, 403
BmeT110I	CYCGRG	2 cut(s)	134, 287
BmgT120I	GGNCC	3 cut(s)	238, 391, 403
BmiI	GGNNCC	4 cut(s)	240, 393, 421, 588
BmrFI	CCNGG	7 cut(s)	95, 225, 236, 248, 378, 389, 401
BmsI	GCATC	2 cut(s)	180, 333
BpmI	CTGGAG	4 cut(s)	77, 98, 218, 371
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	435, 473
BpuMI	CCSGG	2 cut(s)	225, 378
BsaJI	CCNNGG	2 cut(s)	223, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 400
Bse118I	RCCGGY	3 cut(s)	179, 332, 422
BseBI	CCWGG	5 cut(s)	95, 236, 248, 389, 401
BseDI	CCNNGG	2 cut(s)	223, 376
BseGI	GGATG	2 cut(s)	111, 264
BseLI	CCNNNNNNNGG	2 cut(s)	247, 400
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	476
BseYI	CCCAGC	1 cut(s)	551
Bsh1285I	CGRYCG	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	2 cut(s)	141, 294
BsiHKCI	CYCGRG	2 cut(s)	134, 287
BsiSI	CCGG	5 cut(s)	180, 225, 333, 378, 423
BslFI	GGGAC	4 cut(s)	182, 206, 335, 359
BslI	CCNNNNNNNGG	2 cut(s)	247, 400
BsmFI	GGGAC	4 cut(s)	182, 206, 335, 359
BsoBI	CYCGRG	2 cut(s)	134, 287
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	141, 294
Bsp143I	GATC	2 cut(s)	73, 477
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	9 cut(s)	115, 130, 150, 207, 268, 283, 303, 360, 472
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	240, 393, 421, 588
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	419
BsrFI	RCCGGY	3 cut(s)	179, 332, 422
BssAI	RCCGGY	3 cut(s)	179, 332, 422
BssECI	CCNNGG	2 cut(s)	223, 376
BssMI	GATC	2 cut(s)	73, 477
Bst2UI	CCWGG	5 cut(s)	95, 236, 248, 389, 401
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	141, 294, 567
BstDEI	CTNAG	2 cut(s)	35, 525
BstF5I	GGATG	2 cut(s)	111, 264
BstKTI	GATC	2 cut(s)	76, 480
BstMBI	GATC	2 cut(s)	73, 477
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 302, 593
BstNI	CCWGG	5 cut(s)	95, 236, 248, 389, 401
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	7 cut(s)	93, 223, 234, 246, 376, 387, 399
BstSFI	CTRYAG	1 cut(s)	591
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	111, 264
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	141, 294, 567
Cfr10I	RCCGGY	3 cut(s)	179, 332, 422
Cfr13I	GGNCC	3 cut(s)	238, 391, 403
CsiI	ACCWGGT	1 cut(s)	399
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	7 cut(s)	34, 139, 292, 426, 455, 551, 587
CviKI_1	RGCY	7 cut(s)	34, 139, 292, 426, 455, 551, 587
DdeI	CTNAG	2 cut(s)	35, 525
DpnI	GATC	2 cut(s)	75, 479
DpnII	GATC	2 cut(s)	73, 477
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	139, 292
Ecl136II	GAGCTC	2 cut(s)	139, 292
Eco24I	GRGCYC	2 cut(s)	141, 294
Eco47I	GGWCC	3 cut(s)	238, 391, 403
Eco53kI	GAGCTC	2 cut(s)	139, 292
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	2 cut(s)	134, 287
EcoICRI	GAGCTC	2 cut(s)	139, 292
EcoO109I	RGGNCCY	3 cut(s)	238, 391, 403
EcoRII	CCWGG	5 cut(s)	93, 234, 246, 387, 399
EcoT38I	GRGCYC	2 cut(s)	141, 294
FaeI	CATG	1 cut(s)	448
FaiI	YATR	2 cut(s)	446, 539
FaqI	GGGAC	4 cut(s)	182, 206, 335, 359
FatI	CATG	1 cut(s)	444
FauI	CCCGC	2 cut(s)	137, 290
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	2 cut(s)	98, 251
FriOI	GRGCYC	2 cut(s)	141, 294
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	4 cut(s)	77, 98, 218, 371
HapII	CCGG	5 cut(s)	180, 225, 333, 378, 423
Hin1II	CATG	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	98, 251
HpaII	CCGG	5 cut(s)	180, 225, 333, 378, 423
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	173, 326, 544
Hpy188III	TCNNGA	2 cut(s)	77, 436
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	2 cut(s)	219, 372
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 302, 593
HpyF3I	CTNAG	2 cut(s)	35, 525
HpySE526I	ACGT	2 cut(s)	219, 372
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	73, 477
LmnI	GCTCC	2 cut(s)	43, 592
LweI	GCATC	2 cut(s)	180, 333
MabI	ACCWGGT	1 cut(s)	399
MaeII	ACGT	2 cut(s)	219, 372
MalI	GATC	2 cut(s)	75, 479
MboI	GATC	2 cut(s)	73, 477
MboII	GAAGA	4 cut(s)	32, 80, 451, 541
MhlI	GDGCHC	2 cut(s)	141, 294
MluCI	AATT	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	92, 245
MmeI	TCCRAC	2 cut(s)	196, 349
MspI	CCGG	5 cut(s)	180, 225, 333, 378, 423
MspR9I	CCNGG	7 cut(s)	95, 225, 236, 248, 378, 389, 401
MvaI	CCWGG	5 cut(s)	95, 236, 248, 389, 401
MwoI	GCNNNNNNNGC	3 cut(s)	149, 302, 593
NciI	CCSGG	2 cut(s)	225, 378
NdeII	GATC	2 cut(s)	73, 477
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	4 cut(s)	240, 393, 421, 588
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	501
PaeR7I	CTCGAG	2 cut(s)	134, 287
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PflFI	GACNNNGTC	1 cut(s)	401
PfoI	TCCNGGA	3 cut(s)	93, 234, 387
PleI	GAGTC	2 cut(s)	92, 245
PpsI	GAGTC	2 cut(s)	92, 245
PpuMI	RGGWCCY	3 cut(s)	238, 391, 403
Psp124BI	GAGCTC	2 cut(s)	141, 294
Psp5II	RGGWCCY	3 cut(s)	238, 391, 403
Psp6I	CCWGG	5 cut(s)	93, 234, 246, 387, 399
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	5 cut(s)	93, 234, 246, 387, 399
PspN4I	GGNNCC	4 cut(s)	240, 393, 421, 588
PspPI	GGNCC	3 cut(s)	238, 391, 403
PspPPI	RGGWCCY	3 cut(s)	238, 391, 403
PspXI	VCTCGAGB	2 cut(s)	134, 287
PsyI	GACNNNGTC	1 cut(s)	401
SacI	GAGCTC	2 cut(s)	141, 294
SalI	GTCGAC	1 cut(s)	410
Sau3AI	GATC	2 cut(s)	73, 477
Sau96I	GGNCC	3 cut(s)	238, 391, 403
SchI	GAGTC	2 cut(s)	92, 245
ScrFI	CCNGG	7 cut(s)	95, 225, 236, 248, 378, 389, 401
SduI	GDGCHC	2 cut(s)	141, 294
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	180, 333
SfcI	CTRYAG	1 cut(s)	591
Sfr274I	CTCGAG	2 cut(s)	134, 287
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	3 cut(s)	238, 391, 403
SlaI	CTCGAG	2 cut(s)	134, 287
SmlI	CTYRAG	4 cut(s)	134, 287, 450, 488
SmoI	CTYRAG	4 cut(s)	134, 287, 450, 488
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	9 cut(s)	115, 130, 150, 207, 268, 283, 303, 360, 472
SstI	GAGCTC	2 cut(s)	141, 294
StyD4I	CCNGG	7 cut(s)	93, 223, 234, 246, 376, 387, 399
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	2 cut(s)	222, 375
TaqI	TCGA	5 cut(s)	135, 288, 411, 435, 501
TasI	AATT	1 cut(s)	496
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	421, 561
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	1 cut(s)	401
VpaK11BI	GGWCC	3 cut(s)	238, 391, 403
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	2 cut(s)	134, 287
XmiI	GTMKAC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.