Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

153519 .. 156666

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgcggtctggctatggtcgttcaatatttggacctctttttctgggacgtgatattagtggtgaagttgcagctgtgggagcttcagttaagggacttactgtaggacaagaagtttttggtgcattgcatccgactgctgtgaggggtacttatactgattatgcaattctttcagaagatgaacttgcaccaaaaccagcgtcaattacacatgtggaagcaagtgccattccttttgctgcgttgactgcttggcgtgctgtaaaagctactgcgaggatatctgaggtgtatgctcttatatatcaagatttagttaattgtttcagttttgagtcaaagaggcaaaggctgttagtggtgggtggtggaggagctgtaggttttgctgcaatccatcttgcagtagctgctaggtgccatgttactactacatgtggaagccaaagtatagatcgagtattggcagctggtgctgagcaggctgttgactataccgctgaggtgaatcaggacatggcattgacaataaaggggaagtttgatgctgtcttggacaccattggtgggccagagactgaaagaataagcggtgaggctgcatctttgactgatagatatggcatagcaattgggcttccagttgctactgctgttttactgaagaaacagatccagtaccggtcttcccatggaatagagtactggtggaccttcatgagagcagactcagaagggttacatgagatccgaaggctatctgaagctggaaagttaaacatacctgtggagaaaacatttcccatcactcaagtgagagaggctcatgaggcaaaggagaagaagcagattcatggtaaagtagtgctcgaacttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

294

Amino Acids

31.61

Weight (kDa)

6.46

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	11 - 67	1.1e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	127 - 194	9.9e-08	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	159 - 291	1.6e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AciI	CCGC	3 cut(s)	4, 501, 594
AclWI	GGATC	2 cut(s)	670, 745
AcuI	CTGAAG	3 cut(s)	69, 686, 786
AfaI	GTAC	3 cut(s)	151, 683, 707
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	2 cut(s)	214, 437
AgeI	ACCGGT	1 cut(s)	684
AgsI	TTSAA	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	50
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	7 cut(s)	74, 83, 272, 380, 413, 473, 770
AluI	AGCT	7 cut(s)	74, 83, 272, 380, 413, 473, 770
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	670, 745
AlwNI	CAGNNNCTG	2 cut(s)	413, 581
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	6 cut(s)	71, 242, 392, 413, 470, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AsiGI	ACCGGT	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	32, 572, 714
AsuHPI	GGTGA	3 cut(s)	74, 520, 608
AvaII	GGWCC	2 cut(s)	32, 714
BanI	GGYRCC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	873
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	6 cut(s)	83, 229, 379, 400, 482, 589
BccI	CCATC	2 cut(s)	408, 815
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	2 cut(s)	102, 381
BisI	GCNGC	6 cut(s)	72, 243, 393, 414, 471, 603
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	6 cut(s)	73, 244, 394, 415, 472, 604
BmcAI	AGTACT	1 cut(s)	707
Bme18I	GGWCC	2 cut(s)	32, 714
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	32, 572, 714
BmiI	GGNNCC	1 cut(s)	422
BmsI	GCATC	3 cut(s)	139, 538, 614
BpiI	GAAGAC	1 cut(s)	681
BplI	GAGNNNNNCTC	2 cut(s)	811, 843
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	694
BsaWI	WCCGGW	1 cut(s)	684
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	3 cut(s)	644, 679, 713
Bse3DI	GCAATG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	4 cut(s)	279, 471, 495, 747
BseNI	ACTGG	3 cut(s)	644, 679, 713
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	6 cut(s)	83, 229, 379, 400, 482, 589
BshFI	GGCC	1 cut(s)	574
BshNI	GGYRCC	1 cut(s)	420
BshTI	ACCGGT	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	2 cut(s)	60, 108
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	60, 108
BsnI	GGCC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	3 cut(s)	457, 675, 750
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp19I	CCATGG	1 cut(s)	694
BspACI	CCGC	3 cut(s)	4, 501, 594
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	4 cut(s)	280, 472, 496, 746
BspHI	TCATGA	2 cut(s)	720, 829
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	670, 745
BspT107I	GGYRCC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	644, 679, 713
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	3 cut(s)	457, 675, 750
BssT1I	CCWWGG	1 cut(s)	694
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	2 cut(s)	413, 476
BstC8I	GCNNGC	2 cut(s)	261, 486
BstDEI	CTNAG	4 cut(s)	288, 480, 504, 733
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	460, 678, 753
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	3 cut(s)	457, 675, 750
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 251, 260, 269, 413, 476, 485, 833
BstNSI	RCATGY	2 cut(s)	218, 441
BstSFI	CTRYAG	2 cut(s)	102, 381
BstV1I	GCAGC	6 cut(s)	83, 229, 379, 400, 482, 589
BstV2I	GAAGAC	1 cut(s)	681
BstX2I	RGATCY	2 cut(s)	675, 750
BstYI	RGATCY	2 cut(s)	675, 750
BsuRI	GGCC	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	694
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	261, 486
CaiI	CAGNNNCTG	2 cut(s)	413, 581
CciI	TCATGA	2 cut(s)	720, 829
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	3 cut(s)	32, 572, 714
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	150, 682, 706
CspAI	ACCGGT	1 cut(s)	684
CviAII	CATG	9 cut(s)	215, 425, 438, 520, 695, 721, 746, 830, 857
CviQI	GTAC	3 cut(s)	150, 682, 706
DdeI	CTNAG	4 cut(s)	288, 480, 504, 733
DpnI	GATC	3 cut(s)	459, 677, 752
DpnII	GATC	3 cut(s)	457, 675, 750
Eco130I	CCWWGG	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	32, 714
Eco57I	CTGAAG	3 cut(s)	69, 686, 786
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	9 cut(s)	218, 428, 441, 523, 698, 724, 749, 833, 860
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	60, 108
FatI	CATG	9 cut(s)	214, 424, 437, 519, 694, 720, 745, 829, 856
Fnu4HI	GCNGC	6 cut(s)	72, 243, 393, 414, 471, 603
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	72, 243, 393, 414, 471, 603
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	6 cut(s)	72, 243, 393, 414, 471, 603
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	685
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	9 cut(s)	218, 428, 441, 523, 698, 724, 749, 833, 860
HincII	GTYRAC	2 cut(s)	249, 493
HindII	GTYRAC	2 cut(s)	249, 493
HinfI	GANTC	4 cut(s)	338, 511, 731, 853
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	3 cut(s)	74, 520, 608
Hpy166II	GTNNAC	3 cut(s)	249, 493, 714
Hpy188I	TCNGA	6 cut(s)	135, 178, 289, 736, 755, 766
Hpy188III	TCNNGA	4 cut(s)	311, 515, 721, 830
Hpy8I	GTNNAC	3 cut(s)	249, 493, 714
HpyAV	CCTTC	3 cut(s)	727, 731, 750
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	8 cut(s)	71, 125, 130, 167, 191, 395, 407, 605
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 251, 260, 269, 413, 476, 485, 833
HpyF3I	CTNAG	4 cut(s)	288, 480, 504, 733
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	9 cut(s)	218, 428, 441, 523, 698, 724, 749, 833, 860
Kzo9I	GATC	3 cut(s)	457, 675, 750
LmnI	GCTCC	2 cut(s)	80, 377
Lsp1109I	GCAGC	6 cut(s)	83, 229, 379, 400, 482, 589
LweI	GCATC	3 cut(s)	139, 538, 614
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	427, 741
MalI	GATC	3 cut(s)	459, 677, 752
MboI	GATC	3 cut(s)	457, 675, 750
MboII	GAAGA	4 cut(s)	191, 679, 681, 856
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	2 cut(s)	675, 750
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	4 cut(s)	168, 207, 322, 633
MlyI	GAGTC	2 cut(s)	347, 725
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	3 cut(s)	90, 321, 779
MslI	CAYNNNNRTG	2 cut(s)	788, 815
MspA1I	CMGCKG	3 cut(s)	74, 473, 503
MspI	CCGG	1 cut(s)	685
MunI	CAATTG	1 cut(s)	633
MwoI	GCNNNNNNNGC	8 cut(s)	80, 251, 260, 269, 413, 476, 485, 833
NcoI	CCATGG	1 cut(s)	694
NdeII	GATC	3 cut(s)	457, 675, 750
NlaIII	CATG	9 cut(s)	218, 428, 441, 523, 698, 724, 749, 833, 860
NlaIV	GGNNCC	1 cut(s)	422
NspI	RCATGY	2 cut(s)	218, 441
OliI	CACNNNNGTG	1 cut(s)	815
PagI	TCATGA	2 cut(s)	720, 829
PciI	ACATGT	2 cut(s)	214, 437
PfeI	GAWTC	2 cut(s)	511, 853
PinAI	ACCGGT	1 cut(s)	684
PkrI	GCNGC	6 cut(s)	73, 244, 394, 415, 472, 604
PleI	GAGTC	2 cut(s)	346, 725
PpsI	GAGTC	2 cut(s)	346, 725
PscI	ACATGT	2 cut(s)	214, 437
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	3 cut(s)	32, 572, 714
PstNI	CAGNNNCTG	2 cut(s)	413, 581
PsuI	RGATCY	2 cut(s)	675, 750
PvuII	CAGCTG	2 cut(s)	74, 473
RsaI	GTAC	3 cut(s)	151, 683, 707
RsaNI	GTAC	3 cut(s)	150, 682, 706
RseI	CAYNNNNRTG	2 cut(s)	788, 815
SaqAI	TTAA	3 cut(s)	90, 321, 779
SatI	GCNGC	6 cut(s)	72, 243, 393, 414, 471, 603
Sau3AI	GATC	3 cut(s)	457, 675, 750
Sau96I	GGNCC	3 cut(s)	32, 572, 714
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	2 cut(s)	347, 725
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	3 cut(s)	139, 538, 614
SfcI	CTRYAG	2 cut(s)	102, 381
SinI	GGWCC	2 cut(s)	32, 714
SmiMI	CAYNNNNRTG	2 cut(s)	788, 815
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
Sse9I	AATT	4 cut(s)	168, 207, 322, 633
SsiI	CCGC	3 cut(s)	4, 501, 594
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	460, 873
TasI	AATT	4 cut(s)	168, 207, 322, 633
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	511, 853
Tru1I	TTAA	3 cut(s)	90, 321, 779
Tru9I	TTAA	3 cut(s)	90, 321, 779
TseI	GCWGC	6 cut(s)	71, 242, 392, 413, 470, 602
TspDTI	ATGAA	3 cut(s)	198, 709, 845
VpaK11BI	GGWCC	2 cut(s)	32, 714
XceI	RCATGY	2 cut(s)	218, 441
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.