Rmu_sc0003033.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
N/A
Physical Location & Seq
Reverse (-)
42254 .. 43702
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
atgagaaggcagcctaaagcccagcggcccacgtgcgtcacaggcccagaagcagaagagaagcctaggcccagaagtagaagagaagccaaccaagcccaaaagctcatccacattagcgtcgccgcgtcagcaacagctccgccatatcagcgaccgactgccatgtcagcaccgccggccactattccggccgcagcaggtgactttttcaggccaaattttccgacaacctatttcgaggttcgtgatgtccaccaacatctcaaggccgatgaaatcttggatatgattctcgagcctagccaagacgtgctaactgttgagcaagctcaagctttgaaagcaaatagagcagccttagaggcaaataaggctaaagccatcatcctaatgactcgtcatatggatgattcactccagtacgagtgtatgaatgaagaagaccccagaaggttgtgggtctcactcgaagaaagatttggggacagatcacaaggtttcatcattcatgagcttattagagctatgaatatagctaaaaagcatgacaacatccttgtgaagaactataatttgagatctgtagaaacagagcttattccggaatccaattatagtcgcgcccctaagagagagctccaagagcgaaaccctaatcttagggatacttctggacgttctagtccaataatcgctctacttgggaaggtaactgccaaaataggcgaacatgaaaccaaagaggtcaacgtggaaagagagagggaggcaacatctctggccatgttggtggcgccatcaacactaggagccatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

273

Amino Acids

30.75

Weight (kDa)

8.49

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
AasI GACNNNNNNGTC 2 cut(s) 166, 684
Acc36I ACCTGC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 796
AccII CGCG 2 cut(s) 128, 624
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 5 cut(s) 25, 126, 143, 176, 195
AcoI YGGCCR 3 cut(s) 180, 192, 783
AcsI RAATTY 1 cut(s) 220
AcvI CACGTG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 1 cut(s) 425
AgsI TTSAA 1 cut(s) 343
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 9 cut(s) 106, 140, 332, 338, 517, 527, 539, 598, 640
AluI AGCT 9 cut(s) 106, 140, 332, 338, 517, 527, 539, 598, 640
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 1 cut(s) 469
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 8 cut(s) 26, 43, 68, 180, 192, 215, 270, 783
ApeKI GCWGC 3 cut(s) 10, 197, 356
ApoI RAATTY 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 65
AspLEI GCGC 2 cut(s) 626, 799
AspS9I GGNCC 3 cut(s) 27, 44, 69
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 296
AvrII CCTAGG 1 cut(s) 65
BalI TGGCCA 1 cut(s) 785
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 3 cut(s) 22, 209, 368
BccI CCATC 2 cut(s) 392, 808
BciVI GTATCC 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 4 cut(s) 66, 303, 684, 809
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 800
BfuAI ACCTGC 1 cut(s) 191
BfuI GTATCC 1 cut(s) 661
BglI GCCNNNNNGGC 1 cut(s) 365
BglII AGATCT 1 cut(s) 581
BisI GCNGC 6 cut(s) 11, 26, 126, 195, 198, 357
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 6 cut(s) 12, 27, 127, 196, 199, 358
BmeT110I CYCGRG 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 3 cut(s) 27, 44, 69
BmiI GGNNCC 2 cut(s) 798, 814
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 251, 318
BsaAI YACGTR 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 604
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 421
BseAI TCCGGA 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 4 cut(s) 108, 387, 415, 555
BseNI ACTGG 1 cut(s) 421
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 22, 209, 368
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 2 cut(s) 128, 624
Bsh1285I CGRYCG 2 cut(s) 158, 195
BshFI GGCC 8 cut(s) 28, 45, 70, 182, 194, 217, 272, 785
BshNI GGYRCC 1 cut(s) 796
BsiEI CGRYCG 2 cut(s) 158, 195
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 3 cut(s) 179, 191, 605
BslFI GGGAC 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 8 cut(s) 28, 45, 70, 182, 194, 217, 272, 785
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 2 cut(s) 491, 581
BspACI CCGC 5 cut(s) 25, 126, 143, 176, 195
BspANI GGCC 8 cut(s) 28, 45, 70, 182, 194, 217, 272, 785
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 2 cut(s) 128, 624
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 798, 814
BspMI ACCTGC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 796
BspTNI GGTCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 491, 581
BssNI GRCGYC 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 51, 76
BstACI GRCGYC 1 cut(s) 797
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 180, 330
BstDEI CTNAG 3 cut(s) 361, 630, 662
BstF5I GGATG 4 cut(s) 108, 387, 415, 555
BstFNI CGCG 2 cut(s) 128, 624
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 2 cut(s) 626, 799
BstKTI GATC 2 cut(s) 494, 584
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 2 cut(s) 491, 581
BstMCI CGRYCG 2 cut(s) 158, 195
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 2 cut(s) 128, 624
BstV1I GCAGC 3 cut(s) 22, 209, 368
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 1 cut(s) 581
BstZI CGGCCG 1 cut(s) 192
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 8 cut(s) 28, 45, 70, 182, 194, 217, 272, 785
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 4 cut(s) 108, 387, 415, 555
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 180, 330
CciI TCATGA 1 cut(s) 511
CfoI GCGC 2 cut(s) 626, 799
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 27, 44, 69
CseI GACGC 3 cut(s) 25, 109, 117
Csp6I GTAC 1 cut(s) 424
CviAII CATG 5 cut(s) 166, 512, 548, 734, 787
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 3 cut(s) 361, 630, 662
DinI GGCGCC 1 cut(s) 798
DpnI GATC 2 cut(s) 493, 583
DpnII GATC 2 cut(s) 491, 581
DrdI GACNNNNNNGTC 2 cut(s) 166, 684
DseDI GACNNNNNNGTC 2 cut(s) 166, 684
EaeI YGGCCR 3 cut(s) 180, 192, 783
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 51, 76
EarI CTCTTC 2 cut(s) 51, 76
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 640
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 469
Eco52I CGGCCG 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 640
Eco72I CACGTG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 642
EgeI GGCGCC 1 cut(s) 798
EheI GGCGCC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 5 cut(s) 169, 515, 551, 737, 790
FaqI GGGAC 1 cut(s) 500
FatI CATG 5 cut(s) 165, 511, 547, 733, 786
FauNDI CATATG 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 11, 26, 126, 195, 198, 357
FokI GGATG 4 cut(s) 95, 374, 422, 542
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 6 cut(s) 11, 26, 126, 195, 198, 357
FspBI CTAG 4 cut(s) 66, 303, 684, 809
GlaI GCGC 2 cut(s) 625, 798
GluI GCNGC 6 cut(s) 11, 26, 126, 195, 198, 357
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 800
HaeIII GGCC 8 cut(s) 28, 45, 70, 182, 194, 217, 272, 785
HapII CCGG 3 cut(s) 179, 191, 605
HgaI GACGC 3 cut(s) 25, 109, 117
HhaI GCGC 2 cut(s) 626, 799
Hin1I GRCGYC 1 cut(s) 797
Hin1II CATG 5 cut(s) 169, 515, 551, 737, 790
Hin6I GCGC 2 cut(s) 624, 797
HinP1I GCGC 2 cut(s) 624, 797
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 4 cut(s) 292, 397, 413, 608
HpaII CCGG 3 cut(s) 179, 191, 605
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 256, 751
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 5 cut(s) 248, 296, 512, 605, 675
Hpy8I GTNNAC 2 cut(s) 256, 751
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 447, 703
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 4 cut(s) 32, 312, 679, 753
HpyF3I CTNAG 3 cut(s) 361, 630, 662
HpySE526I ACGT 4 cut(s) 32, 312, 679, 753
Hsp92I GRCGYC 1 cut(s) 797
Hsp92II CATG 5 cut(s) 169, 515, 551, 737, 790
HspAI GCGC 2 cut(s) 624, 797
KasI GGCGCC 1 cut(s) 796
Kpn2I TCCGGA 1 cut(s) 604
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 491, 581
LmnI GCTCC 3 cut(s) 145, 645, 812
Lsp1109I GCAGC 3 cut(s) 22, 209, 368
MaeI CTAG 4 cut(s) 66, 303, 684, 809
MaeII ACGT 4 cut(s) 32, 312, 679, 753
MaeIII GTNAC 3 cut(s) 37, 203, 712
MalI GATC 2 cut(s) 493, 583
MboI GATC 2 cut(s) 491, 581
MboII GAAGA 6 cut(s) 68, 93, 452, 455, 485, 577
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 3 cut(s) 220, 574, 613
MluNI TGGCCA 1 cut(s) 785
Mly113I GGCGCC 1 cut(s) 797
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 5 cut(s) 235, 358, 739, 759, 763
Mox20I TGGCCA 1 cut(s) 785
MroI TCCGGA 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 178
MscI TGGCCA 1 cut(s) 785
MslI CAYNNNNRTG 4 cut(s) 392, 408, 560, 791
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 3 cut(s) 179, 191, 605
MvnI CGCG 2 cut(s) 128, 624
NaeI GCCGGC 1 cut(s) 180
NarI GGCGCC 1 cut(s) 797
NdeI CATATG 1 cut(s) 405
NdeII GATC 2 cut(s) 491, 581
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 5 cut(s) 169, 515, 551, 737, 790
NlaIV GGNNCC 2 cut(s) 798, 814
NmuCI GTSAC 2 cut(s) 37, 203
PaeR7I CTCGAG 1 cut(s) 296
PagI TCATGA 1 cut(s) 511
PaqCI CACCTGC 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 3 cut(s) 292, 413, 608
PkrI GCNGC 6 cut(s) 12, 27, 127, 196, 199, 358
PleI GAGTC 1 cut(s) 391
PluTI GGCGCC 1 cut(s) 800
PmaCI CACGTG 1 cut(s) 33
PmlI CACGTG 1 cut(s) 33
PpsI GAGTC 1 cut(s) 391
Ppu21I YACGTR 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 642
PspCI CACGTG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 798, 814
PspPI GGNCC 3 cut(s) 27, 44, 69
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 4 cut(s) 392, 408, 560, 791
SacI GAGCTC 1 cut(s) 642
SatI GCNGC 6 cut(s) 11, 26, 126, 195, 198, 357
Sau3AI GATC 2 cut(s) 491, 581
Sau96I GGNCC 3 cut(s) 27, 44, 69
SchI GAGTC 1 cut(s) 391
SduI GDGCHC 1 cut(s) 642
SfcI CTRYAG 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 798
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 4 cut(s) 392, 408, 560, 791
SmlI CTYRAG 3 cut(s) 266, 296, 333
SmoI CTYRAG 3 cut(s) 266, 296, 333
Sse9I AATT 3 cut(s) 220, 574, 613
SsiI CCGC 5 cut(s) 25, 126, 143, 176, 195
SspDI GGCGCC 1 cut(s) 796
SspMI CTAG 4 cut(s) 66, 303, 684, 809
SstI GAGCTC 1 cut(s) 642
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 4 cut(s) 35, 315, 682, 756
TaqI TCGA 3 cut(s) 240, 297, 471
TaqII GACCGA 1 cut(s) 172
TasI AATT 3 cut(s) 220, 574, 613
TauI GCSGC 3 cut(s) 28, 128, 197
TfiI GAWTC 3 cut(s) 292, 413, 608
TseFI GTSAC 2 cut(s) 37, 203
TseI GCWGC 3 cut(s) 10, 197, 356
Tsp45I GTSAC 2 cut(s) 37, 203
TspDTI ATGAA 7 cut(s) 291, 449, 453, 493, 500, 545, 750
XapI RAATTY 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 296
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 4 cut(s) 66, 303, 684, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.