Rmu_sc0003033.1_g000067

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
N/A
Physical Location & Seq
Forward (+)
265494 .. 265781
288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
atgaatgaagaagaccccagaaggctgtgggtctcactcgaagatagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacacatgcaatgttgattgagaagactctctctaccttccccatctctgcattgatggttgctaagaactatagaatcgatgttgctgtgttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

11.13

Weight (kDa)

5.64

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 173
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
Alw26I GTCTC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 150
BbsI GAAGAC 2 cut(s) 18, 221
BccI CCATC 3 cut(s) 87, 241, 242
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 18, 221
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 270
BseMI GCAATG 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 207
BssMI GATC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 18, 221
Bsu15I ATCGAT 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 270
CviAII CATG 1 cut(s) 197
CviJI RGCY 2 cut(s) 25, 102
CviKI_1 RGCY 2 cut(s) 25, 102
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 99, 198, 264
FatI CATG 1 cut(s) 196
FspBI CTAG 1 cut(s) 83
Hin1II CATG 1 cut(s) 200
HinfI GANTC 3 cut(s) 65, 217, 267
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 77, 131
HpyAV CCTTC 2 cut(s) 15, 238
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 200, 242
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 31, 90
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 20, 23, 53, 226
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 59, 211
MnlI CCTC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 2 cut(s) 159, 167
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 267
PleI GAGTC 2 cut(s) 59, 211
PpsI GAGTC 2 cut(s) 59, 211
SaqAI TTAA 2 cut(s) 159, 167
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 59, 211
SetI ASST 3 cut(s) 60, 84, 230
SfcI CTRYAG 1 cut(s) 262
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 83
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 39, 270
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 159, 167
Tru9I TTAA 2 cut(s) 159, 167
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 17, 21
TspGWI ACGGA 1 cut(s) 50
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.