Rmu_sc0003065.1_g000009

Galactolipase DONGLE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003065.1
N/A
Physical Location & Seq
Reverse (-)
45670 .. 46113
444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
atgcgatgtgaagagttgggtgtcaaagtgttgaggatagtaaacgtgaacgatccgatcactaagatgcctggaatggtgttcaatcatgagaattttagggttttgggcagtgagcgattttcatttgagttcccttggagttgctcctgttatgcacatgttggtgttgaattggtgcttgatttcttcaacatgcaaaacccttcgtgtgttcatgatctggggacttatatcagcttgctcaaatgccccaagagaccatcaatggagattcaaagagataatcaaggtggggattttgtgaataaggcaaaagtattgctctcgaatataattagtgcgcaaaatttgaacctgcagctaccaatcccatggagaagtagtagtactactgctgaaagcaatatggtgaatctgcaggttcaatcacaaagaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005811 GO:0006082 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009653 GO:0009657 GO:0009668 GO:0009694 GO:0009695 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010027 GO:0010073 GO:0010150 GO:0010582 GO:0010817 GO:0016042 GO:0016043 GO:0016053 GO:0016298 GO:0016787 GO:0016788 GO:0019433 GO:0019752 GO:0022414 GO:0030308 GO:0032501 GO:0032502 GO:0032787 GO:0040008 GO:0042445 GO:0042446 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046394 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047714 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051704 GO:0051707 GO:0052689 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072330 GO:0090567 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901575 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

7.65

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
Acc36I ACCTGC 2 cut(s) 366, 412
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 94, 349
AfaI GTAC 1 cut(s) 391
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 6 cut(s) 85, 173, 193, 278, 355, 428
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 240, 364
AluI AGCT 2 cut(s) 240, 364
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 94, 349
AspLEI GCGC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 424
BarI GAAGNNNNNNTAC 2 cut(s) 373, 405
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 253
BfmI CTRYAG 2 cut(s) 359, 419
BfuAI ACCTGC 2 cut(s) 366, 412
BisI GCNGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 137, 374
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 137, 374
BseXI GCAGC 1 cut(s) 373
BslFI GGGAC 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 52, 57, 220
Bsp19I CCATGG 1 cut(s) 374
BspHI TCATGA 2 cut(s) 88, 217
BspMAI CTGCAG 2 cut(s) 363, 423
BspMI ACCTGC 2 cut(s) 366, 412
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 137, 374
BssMI GATC 3 cut(s) 52, 57, 220
BssT1I CCWWGG 2 cut(s) 137, 374
Bst2UI CCWGG 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 55, 60, 223
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 3 cut(s) 52, 57, 220
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 2 cut(s) 164, 199
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 359, 419
BstV1I GCAGC 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
BveI ACCTGC 2 cut(s) 366, 412
Cac8I GCNNGC 1 cut(s) 242
CciI TCATGA 2 cut(s) 88, 217
CfoI GCGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 390
CviAII CATG 5 cut(s) 89, 161, 196, 218, 375
CviJI RGCY 2 cut(s) 240, 364
CviKI_1 RGCY 2 cut(s) 240, 364
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 54, 59, 222
DpnII GATC 3 cut(s) 52, 57, 220
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 137, 374
Eco31I GGTCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 137, 374
ErhI CCWWGG 2 cut(s) 137, 374
FaeI CATG 5 cut(s) 92, 164, 199, 221, 378
FaqI GGGAC 1 cut(s) 241
FatI CATG 5 cut(s) 88, 160, 195, 217, 374
Fnu4HI GCNGC 1 cut(s) 362
Fsp4HI GCNGC 1 cut(s) 362
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 346
Hin1II CATG 5 cut(s) 92, 164, 199, 221, 378
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 2 cut(s) 274, 415
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 43, 49
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 89, 218, 328
Hpy8I GTNNAC 2 cut(s) 43, 49
HpyAV CCTTC 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 158, 199, 361, 421
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 5 cut(s) 92, 164, 199, 221, 378
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 3 cut(s) 52, 57, 220
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 6 cut(s) 57, 84, 163, 209, 371, 407
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 57
MaeII ACGT 1 cut(s) 45
MalI GATC 3 cut(s) 54, 59, 222
MboI GATC 3 cut(s) 52, 57, 220
MboII GAAGA 2 cut(s) 23, 181
MluCI AATT 4 cut(s) 94, 173, 336, 349
MnlI CCTC 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 65, 165
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 374
NdeII GATC 3 cut(s) 52, 57, 220
NlaIII CATG 5 cut(s) 92, 164, 199, 221, 378
NsbI TGCGCA 1 cut(s) 345
NspI RCATGY 2 cut(s) 164, 199
PagI TCATGA 2 cut(s) 88, 217
PciI ACATGT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 274, 415
PkrI GCNGC 1 cut(s) 363
PscI ACATGT 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PstI CTGCAG 2 cut(s) 363, 423
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 2 cut(s) 65, 165
SatI GCNGC 1 cut(s) 362
Sau3AI GATC 3 cut(s) 52, 57, 220
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 72
SetI ASST 6 cut(s) 48, 242, 295, 360, 366, 426
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 359, 419
SmiMI CAYNNNNRTG 2 cut(s) 65, 165
Sse9I AATT 4 cut(s) 94, 173, 336, 349
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 2 cut(s) 137, 374
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 329
TasI AATT 4 cut(s) 94, 173, 336, 349
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 2 cut(s) 274, 415
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 114, 206
TspRI CASTG 1 cut(s) 118
XapI RAATTY 2 cut(s) 94, 349
XceI RCATGY 2 cut(s) 164, 199
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.