Rmu_sc0003069.1_g000024

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003069.1
N/A
Physical Location & Seq
Forward (+)
130039 .. 131167
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
atgcctcaccgaaacttggtttcctgcctcaccgaaacttggtttcctcagaacttgaggttctccgagagtttcaaggccttttcccagatgagaagtgctggggagagcccgacccagtttgcatttgcaagtgtcatcagagcttgtgtggttcttgggtccattgagattgggaggcagctgcattctcttgctttgaaattgggcttggcttgtgatctgtttgtgggtagtaatttagcggatatgtattcgaaatgtgggttcatgacttcatggttgaggcttgtaaggtttttgaggaaatgccgagtggtcaagtttaattttgatagagacaattttgtgtcttctgttcttgttgatatgtatggtaaatgtgggttacttgatcactcaatacaagtgtctgacgagatagcaaacccgactgaagttgaatggaattcgttgctaaatgtatttgcagttcatggcttaggaaatgacgccttgaaaacttttagtagaatggtccaagcaggggtgaaaccaaatgcaataacatttatcagtcttttgacagggtgtagccattctggattggtagaggaaggtttaaagtacttttactctatggagaaagcatatggactagtacctagagctggacattactcttgcattatttatttacttggccgggctggaaggcttgaagatcccgaagatttcattaacagcatgccaatgcagccaaatgcttttggttggtgctcttttcttggtgcttgcacgattcatggtgataaagagggccaaactggcagcggagaaattgatacagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

277

Amino Acids

30.66

Weight (kDa)

6.65

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 144 - 192 1.3e-10 PPR repeat family
PPR_3 PF13812 147 - 191 8.7e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 245, 813
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 608, 642
AfiI CCNNNNNNNGG 4 cut(s) 16, 39, 526, 650
AgsI TTSAA 5 cut(s) 76, 202, 443, 499, 701
AhlI ACTAGT 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 4 cut(s) 146, 184, 650, 830
AluI AGCT 4 cut(s) 146, 184, 650, 830
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 698
AoxI GGCC 3 cut(s) 78, 682, 799
ApeKI GCWGC 4 cut(s) 181, 184, 736, 810
ApoI RAATTY 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 162, 517, 799
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 3 cut(s) 22, 541, 800
AsuII TTCGAA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 162, 517
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 761
BbvI GCAGC 4 cut(s) 171, 193, 748, 822
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 333
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 2 cut(s) 638, 645
BglI GCCNNNNNGGC 1 cut(s) 807
BisI GCNGC 4 cut(s) 182, 185, 737, 811
BlsI GCNGC 4 cut(s) 183, 186, 738, 812
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 2 cut(s) 162, 517
BmgT120I GGNCC 3 cut(s) 162, 517, 799
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 686
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 686
BsaHI GRCGYC 1 cut(s) 492
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 39, 526, 650
Bse1I ACTGG 2 cut(s) 118, 811
BseLI CCNNNNNNNGG 4 cut(s) 16, 39, 526, 650
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 118, 811
BseXI GCAGC 4 cut(s) 171, 193, 748, 822
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 3 cut(s) 80, 684, 801
BsiHKAI GWGCWC 1 cut(s) 761
BsiSI CCGG 1 cut(s) 685
BslI CCNNNNNNNGG 4 cut(s) 16, 39, 526, 650
BsmAI GTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 3 cut(s) 80, 684, 801
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 113, 761
Bsp143I GATC 3 cut(s) 220, 394, 703
BspACI CCGC 2 cut(s) 245, 813
BspANI GGCC 3 cut(s) 80, 684, 801
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 257
BsrI ACTGG 2 cut(s) 118, 811
BssMI GATC 3 cut(s) 220, 394, 703
BssNI GRCGYC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 728, 775
BstDEI CTNAG 2 cut(s) 48, 481
BstKTI GATC 3 cut(s) 223, 397, 706
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 220, 394, 703
BstMWI GCNNNNNNNGC 2 cut(s) 736, 807
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 684
BstV1I GCAGC 4 cut(s) 171, 193, 748, 822
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BsuRI GGCC 3 cut(s) 80, 684, 801
Cac8I GCNNGC 2 cut(s) 728, 775
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 162, 517, 799
CseI GACGC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 607, 641
CviAII CATG 5 cut(s) 271, 279, 476, 727, 785
CviQI GTAC 2 cut(s) 607, 641
DdeI CTNAG 2 cut(s) 48, 481
DpnI GATC 3 cut(s) 222, 396, 705
DpnII GATC 3 cut(s) 220, 394, 703
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 162, 517
Eco57I CTGAAG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 5 cut(s) 274, 282, 479, 730, 788
FatI CATG 5 cut(s) 270, 278, 475, 726, 784
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 4 cut(s) 182, 185, 737, 811
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 4 cut(s) 182, 185, 737, 811
FspBI CTAG 2 cut(s) 638, 645
GluI GCNGC 4 cut(s) 182, 185, 737, 811
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 3 cut(s) 80, 684, 801
HapII CCGG 1 cut(s) 685
HgaI GACGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 5 cut(s) 274, 282, 479, 730, 788
HinfI GANTC 1 cut(s) 781
HpaII CCGG 1 cut(s) 685
HphI GGTGA 3 cut(s) 22, 541, 800
Hpy188I TCNGA 4 cut(s) 51, 67, 143, 415
Hpy188III TCNNGA 3 cut(s) 271, 582, 707
HpyAV CCTTC 2 cut(s) 590, 687
HpyCH4V TGCA 8 cut(s) 125, 131, 187, 470, 542, 666, 736, 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 736, 807
HpyF3I CTNAG 2 cut(s) 48, 481
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 5 cut(s) 274, 282, 479, 730, 788
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 220, 394, 703
Lsp1109I GCAGC 4 cut(s) 171, 193, 748, 822
MaeI CTAG 2 cut(s) 638, 645
MaeIII GTNAC 1 cut(s) 387
MalI GATC 3 cut(s) 222, 396, 705
MboI GATC 3 cut(s) 220, 394, 703
MboII GAAGA 3 cut(s) 345, 713, 722
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 2 cut(s) 113, 761
MluCI AATT 6 cut(s) 203, 238, 328, 343, 448, 819
MnlI CCTC 9 cut(s) 15, 38, 51, 57, 171, 279, 297, 586, 790
MseI TTAA 3 cut(s) 327, 602, 720
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 2 cut(s) 184, 813
MspI CCGG 1 cut(s) 685
MspR9I CCNGG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 736, 807
NciI CCSGG 1 cut(s) 686
NdeI CATATG 1 cut(s) 631
NdeII GATC 3 cut(s) 220, 394, 703
NlaIII CATG 5 cut(s) 274, 282, 479, 730, 788
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 730
NspV TTCGAA 1 cut(s) 257
PaeI GCATGC 1 cut(s) 730
PagI TCATGA 1 cut(s) 270
PceI AGGCCT 1 cut(s) 80
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 781
PkrI GCNGC 4 cut(s) 183, 186, 738, 812
PspFI CCCAGC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 3 cut(s) 162, 517, 799
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
PsuI RGATCY 1 cut(s) 703
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 2 cut(s) 608, 642
RsaNI GTAC 2 cut(s) 607, 641
RseI CAYNNNNRTG 1 cut(s) 731
SaqAI TTAA 3 cut(s) 327, 602, 720
SatI GCNGC 4 cut(s) 182, 185, 737, 811
Sau3AI GATC 3 cut(s) 220, 394, 703
Sau96I GGNCC 3 cut(s) 162, 517, 799
ScaI AGTACT 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 2 cut(s) 113, 761
SetI ASST 8 cut(s) 62, 148, 186, 299, 601, 646, 652, 832
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 2 cut(s) 162, 517
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 637
SphI GCATGC 1 cut(s) 730
Sse9I AATT 6 cut(s) 203, 238, 328, 343, 448, 819
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 2 cut(s) 245, 813
SspMI CTAG 2 cut(s) 638, 645
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 684
TaqI TCGA 1 cut(s) 257
TasI AATT 6 cut(s) 203, 238, 328, 343, 448, 819
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 3 cut(s) 327, 602, 720
Tru9I TTAA 3 cut(s) 327, 602, 720
TseI GCWGC 4 cut(s) 181, 184, 736, 810
TspDTI ATGAA 5 cut(s) 259, 267, 464, 706, 773
VpaK11BI GGWCC 2 cut(s) 162, 517
XapI RAATTY 1 cut(s) 448
XceI RCATGY 1 cut(s) 730
XspI CTAG 2 cut(s) 638, 645
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.