Rmu_sc0003069.1_g000046

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003069.1
N/A
Physical Location & Seq
Reverse (-)
196973 .. 201036
4064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003069.1_g000046.1.cds

Sequence Viewer

Length: 1818 bp
atgtcagaggataatcaagaaccggttgatgttggagcctctgcatctcttccttcatcatcagctcctcggtggaagcatgatgtgtttttgagtgtcaggggtgcagacactcgcaagggtattacatttgaattatacgatcgactgcaaaacaggagaggaatcaaaacatttatggatgaccaagaccttcaagtaggggatgttatttctcccactctcctaacggcaattaaagaatcaaggttggcaattattgttctctctcaaaactatgcctcttccacttggtgtttggaggaacttagaaacatttgtgaatgcatggaagaagacaacaatagaattctgccacttttttattatgtggaacctactgatgtacgatatcagaagaggagtttcggggatgcttttactaagcatgaaaaatcagagcaacaaagatcagagaaggtgccgcagtggagagatgctttaaaaaaagtggcaaatttctctggatggcacacacagaattatagaactgaaagagaacttttggatgccattgaggaatctgtgtgcaataaattgcgacctactgaacttgagtttaaattgtccatcggaggttttgaagcatttgcagcaacaaaacaagccattgataaggtcactaatgcagaacaaaatttacgagctacccgaagagttgattattgtgggaacatatttgacatttctgtaatcggaaaacttcacaagcttgagattcttagtatgagagcaaatggtctgagagaattgccaagagaaataggacaattgaccaatctaaggatgctggatgtcagtactaatggtggtagaccctcttttggatccaggaaagaatgtattggcacaattccatctaaagtgatatcaaagttgcataaattagaagaactgtacatgcagtattgtggatttttggactgggggagtaaaattgatggagaaggagaagaaactaatgttggctttgatgaattagctggtttatcatatttaagcgttttgaaagtttgcatatcagatgcaaattgtatccctaagagtgttaaggtcgaaccgaattgggtttactttgatattagaatttctagcaaccataatagaaggcgtcccattgaggaatttcaatctggtcaaacttgcagatacttgagtcttgataaaactgacacaaccataggaaccttttcggactggtttgtcaacactgtggtaaagaatactgagaggctgcgttatgaaagatgcagagggttaagtaacattcttgcggaatatgaccgtgggaggtttcgtggactgaaatttctcactgtcttggaaagagtaatcgaagcaaggagagaaacattgaacaacaagaagaccgtacttccaaaattgaagaacctagcgttgctagatcttccaatgttgtacaagggaagtgctactattgattttgagtgtccttcattggaaaccttgcgtctggaggactgcccccacttgtcatttctatcctctgcttctgactacttccacagcaggaaaccaactcagaagctccgatcaagtggagcaagctggtcaggacattccacaaggtcatcagcctctgagcttcaaccaaaatccgcttccaacaatggcatttgcaagctcaagcccaacgccaaagccaaagccaccaaagaggaatacaatttcaaaaaaatggaggatctcaaagccaagaacagagctttcatggaggcttttactgaccaagctcttcaccggaatcaattccattaa

Protein Analysis

605

Amino Acids

69.11

Weight (kDa)

8.73

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1241
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 853
AciI CCGC 3 cut(s) 464, 1313, 1659
AclWI GGATC 3 cut(s) 861, 874, 1752
AcsI RAATTY 6 cut(s) 348, 496, 676, 1125, 1163, 1346
AcyI GRCGYC 1 cut(s) 1150
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 5 cut(s) 387, 841, 938, 1413, 1460
AfiI CCNNNNNNNGG 2 cut(s) 822, 863
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 9 cut(s) 134, 197, 623, 1048, 1169, 1396, 1426, 1649, 1732
AjnI CCWGG 1 cut(s) 869
AjuI GAANNNNNNNTTGG 4 cut(s) 987, 1019, 1645, 1677
AlwI GGATC 3 cut(s) 861, 874, 1752
AlwNI CAGNNNCTG 1 cut(s) 1640
ApeKI GCWGC 2 cut(s) 632, 1273
ApoI RAATTY 6 cut(s) 348, 496, 676, 1125, 1163, 1346
AsiGI ACCGGT 1 cut(s) 22
Asp700I GAANNNNTTC 2 cut(s) 1228, 1808
AsuHPI GGTGA 1 cut(s) 1790
BaeI ACNNNNGTAYC 2 cut(s) 1180, 1213
BamHI GGATCC 1 cut(s) 866
BanI GGYRCC 1 cut(s) 460
BbsI GAAGAC 2 cut(s) 342, 1412
BbvI GCAGC 2 cut(s) 644, 1260
BccI CCATC 4 cut(s) 501, 617, 904, 974
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 871
BciVI GTATCC 1 cut(s) 1085
BfaI CTAG 3 cut(s) 1131, 1433, 1442
BfuI GTATCC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 1444
BisI GCNGC 3 cut(s) 464, 633, 1274
BlsI GCNGC 3 cut(s) 465, 634, 1275
BmcAI AGTACT 1 cut(s) 841
Bme1390I CCNGG 1 cut(s) 871
BmiI GGNNCC 5 cut(s) 37, 375, 462, 868, 1225
BmrFI CCNGG 1 cut(s) 871
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 7 cut(s) 53, 403, 466, 538, 816, 1054, 1277
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 2 cut(s) 342, 1412
BpmI CTGGAG 1 cut(s) 1535
BpuEI CTTGAG 4 cut(s) 614, 773, 1213, 1670
BsaHI GRCGYC 1 cut(s) 1150
BsaJI CCNNGG 2 cut(s) 68, 1324
BsaWI WCCGGW 2 cut(s) 22, 1800
BsaXI ACNNNNNCTCC 2 cut(s) 1321, 1351
Bsc4I CCNNNNNNNGG 2 cut(s) 822, 863
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 968, 1241
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 2 cut(s) 68, 1324
BseGI GGATG 7 cut(s) 187, 211, 418, 512, 553, 831, 838
BseLI CCNNNNNNNGG 2 cut(s) 822, 863
BseMII CTCAG 4 cut(s) 773, 1257, 1595, 1632
BseNI ACTGG 2 cut(s) 968, 1241
BseRI GAGGAG 2 cut(s) 57, 415
BseXI GCAGC 2 cut(s) 644, 1260
BsgI GTGCAG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 460
BshTI ACCGGT 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 23, 1801
BslFI GGGAC 1 cut(s) 1137
BslI CCNNNNNNNGG 2 cut(s) 822, 863
BsmFI GGGAC 1 cut(s) 1137
BsmI GAATGC 1 cut(s) 329
Bsp1407I TGTACA 2 cut(s) 936, 1458
Bsp143I GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
BspACI CCGC 3 cut(s) 464, 1313, 1659
BspCNI CTCAG 4 cut(s) 774, 1258, 1594, 1633
BspLI GGNNCC 5 cut(s) 37, 375, 462, 868, 1225
BspPI GGATC 3 cut(s) 861, 874, 1752
BspQI GCTCTTC 1 cut(s) 1800
BspT107I GGYRCC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 2 cut(s) 936, 1458
BsrI ACTGG 2 cut(s) 968, 1241
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 68, 1324
BssMI GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
BssNI GRCGYC 1 cut(s) 1150
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 5 cut(s) 936, 1252, 1325, 1357, 1411
Bst6I CTCTTC 5 cut(s) 54, 289, 392, 688, 1800
BstACI GRCGYC 1 cut(s) 1150
BstAUI TGTACA 2 cut(s) 936, 1458
BstC8I GCNNGC 2 cut(s) 1606, 1682
BstDEI CTNAG 9 cut(s) 308, 423, 761, 782, 821, 1080, 1266, 1581, 1641
BstDSI CCRYGG 1 cut(s) 1324
BstF5I GGATG 7 cut(s) 187, 211, 418, 512, 553, 831, 838
BstKTI GATC 6 cut(s) 145, 452, 869, 1447, 1595, 1747
BstMBI GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 1 cut(s) 869
BstV1I GCAGC 2 cut(s) 644, 1260
BstV2I GAAGAC 2 cut(s) 342, 1412
BstX2I RGATCY 3 cut(s) 866, 1444, 1744
BstYI RGATCY 3 cut(s) 866, 1444, 1744
BsuI GTATCC 1 cut(s) 1085
BtgI CCRYGG 1 cut(s) 1324
BtsCI GGATG 7 cut(s) 187, 211, 418, 512, 553, 831, 838
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 3 cut(s) 473, 1248, 1353
Cac8I GCNNGC 2 cut(s) 1606, 1682
CaiI CAGNNNCTG 1 cut(s) 1640
Cfr10I RCCGGY 1 cut(s) 22
CseI GACGC 2 cut(s) 1139, 1499
Csp6I GTAC 5 cut(s) 386, 840, 937, 1412, 1459
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 5 cut(s) 80, 328, 428, 940, 1771
CviQI GTAC 5 cut(s) 386, 840, 937, 1412, 1459
DdeI CTNAG 9 cut(s) 308, 423, 761, 782, 821, 1080, 1266, 1581, 1641
DpnI GATC 6 cut(s) 144, 451, 868, 1446, 1594, 1746
DpnII GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
DraI TTTAAA 2 cut(s) 483, 601
DraIII CACNNNGTG 1 cut(s) 294
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
Eam1104I CTCTTC 5 cut(s) 54, 289, 392, 688, 1800
EarI CTCTTC 5 cut(s) 54, 289, 392, 688, 1800
Eco32I GATATC 2 cut(s) 392, 909
EcoRI GAATTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 869
EcoRV GATATC 2 cut(s) 392, 909
EcoT22I ATGCAT 1 cut(s) 329
FaeI CATG 5 cut(s) 83, 331, 431, 943, 1774
FaqI GGGAC 1 cut(s) 1137
FatI CATG 5 cut(s) 79, 327, 427, 939, 1770
FblI GTMKAC 1 cut(s) 853
Fnu4HI GCNGC 3 cut(s) 464, 633, 1274
FokI GGATG 7 cut(s) 194, 218, 425, 519, 560, 838, 845
Fsp4HI GCNGC 3 cut(s) 464, 633, 1274
FspBI CTAG 3 cut(s) 1131, 1433, 1442
GluI GCNGC 3 cut(s) 464, 633, 1274
GsuI CTGGAG 1 cut(s) 1535
HapII CCGG 2 cut(s) 23, 1801
HgaI GACGC 2 cut(s) 1139, 1499
Hin1I GRCGYC 1 cut(s) 1150
Hin1II CATG 5 cut(s) 83, 331, 431, 943, 1774
HincII GTYRAC 1 cut(s) 1246
HindII GTYRAC 1 cut(s) 1246
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 6 cut(s) 165, 242, 560, 757, 1195, 1804
HpaII CCGG 2 cut(s) 23, 1801
HphI GGTGA 1 cut(s) 1790
Hpy166II GTNNAC 4 cut(s) 854, 1111, 1246, 1340
Hpy188III TCNNGA 5 cut(s) 17, 504, 1199, 1514, 1614
Hpy8I GTNNAC 4 cut(s) 854, 1111, 1246, 1340
HpyAV CCTTC 6 cut(s) 63, 203, 451, 980, 1140, 1503
HpyCH4III ACNGT 5 cut(s) 936, 1252, 1325, 1357, 1411
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 9 cut(s) 308, 423, 761, 782, 821, 1080, 1266, 1581, 1641
Hsp92I GRCGYC 1 cut(s) 1150
Hsp92II CATG 5 cut(s) 83, 331, 431, 943, 1774
Kzo9I GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
LguI GCTCTTC 1 cut(s) 1800
LmnI GCTCC 4 cut(s) 35, 70, 1593, 1601
Lsp1109I GCAGC 2 cut(s) 644, 1260
LweI GCATC 7 cut(s) 53, 403, 466, 538, 816, 1054, 1277
MaeI CTAG 3 cut(s) 1131, 1433, 1442
MaeIII GTNAC 2 cut(s) 658, 1301
MalI GATC 6 cut(s) 144, 451, 868, 1446, 1594, 1746
MboI GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 3 cut(s) 866, 1444, 1744
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 2 cut(s) 13, 1689
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 2 cut(s) 1228, 1808
MseI TTAA 7 cut(s) 237, 482, 600, 1037, 1089, 1298, 1816
MspI CCGG 2 cut(s) 23, 1801
MspR9I CCNGG 1 cut(s) 871
MunI CAATTG 1 cut(s) 809
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 871
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeII GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
NlaIII CATG 5 cut(s) 83, 331, 431, 943, 1774
NlaIV GGNNCC 5 cut(s) 37, 375, 462, 868, 1225
NmuCI GTSAC 1 cut(s) 658
NsiI ATGCAT 1 cut(s) 329
NspI RCATGY 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 1800
PcsI WCGNNNNNNNCGW 1 cut(s) 688
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 2 cut(s) 1228, 1808
PfeI GAWTC 5 cut(s) 165, 242, 560, 757, 1804
PfoI TCCNGGA 1 cut(s) 869
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 3 cut(s) 465, 634, 1275
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 1 cut(s) 1203
PpsI GAGTC 1 cut(s) 1203
Psp6I CCWGG 1 cut(s) 869
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 5 cut(s) 37, 375, 462, 868, 1225
PsrI GAACNNNNNNTAC 2 cut(s) 663, 695
PstNI CAGNNNCTG 1 cut(s) 1640
PsuI RGATCY 3 cut(s) 866, 1444, 1744
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 5 cut(s) 387, 841, 938, 1413, 1460
RsaNI GTAC 5 cut(s) 386, 840, 937, 1412, 1459
SapI GCTCTTC 1 cut(s) 1800
SaqAI TTAA 7 cut(s) 237, 482, 600, 1037, 1089, 1298, 1816
SatI GCNGC 3 cut(s) 464, 633, 1274
Sau3AI GATC 6 cut(s) 142, 449, 866, 1444, 1592, 1744
ScaI AGTACT 1 cut(s) 841
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 1 cut(s) 871
SfaNI GCATC 7 cut(s) 53, 403, 466, 538, 816, 1054, 1277
SmlI CTYRAG 4 cut(s) 593, 752, 1192, 1685
SmoI CTYRAG 4 cut(s) 593, 752, 1192, 1685
SsiI CCGC 3 cut(s) 464, 1313, 1659
SspMI CTAG 3 cut(s) 1131, 1433, 1442
StyD4I CCNGG 1 cut(s) 869
TaaI ACNGT 5 cut(s) 936, 1252, 1325, 1357, 1411
TaqI TCGA 3 cut(s) 145, 1095, 1374
TatI WGTACW 3 cut(s) 839, 936, 1458
TauI GCSGC 1 cut(s) 466
TfiI GAWTC 5 cut(s) 165, 242, 560, 757, 1804
Tru1I TTAA 7 cut(s) 237, 482, 600, 1037, 1089, 1298, 1816
Tru9I TTAA 7 cut(s) 237, 482, 600, 1037, 1089, 1298, 1816
TscAI CASTG 3 cut(s) 473, 1255, 1360
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 2 cut(s) 632, 1273
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 6 cut(s) 45, 444, 1029, 1296, 1485, 1759
TspRI CASTG 3 cut(s) 473, 1255, 1360
XapI RAATTY 6 cut(s) 348, 496, 676, 1125, 1163, 1346
XceI RCATGY 1 cut(s) 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 853
XmnI GAANNNNTTC 2 cut(s) 1228, 1808
XspI CTAG 3 cut(s) 1131, 1433, 1442
ZrmI AGTACT 1 cut(s) 841
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.