Rmu_sc0003073.1_g000004

Flocculation protein FLO11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003073.1
OG0031237
Physical Location & Seq
Reverse (-)
7120 .. 8024
905 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atggaaagaagcttcgggaaggtggtcaatgccaacgacagagacgaagagctcgctctgtttctcgagatgcggcgccgcgacaaggacaaggagaaaaatggaaactttctgctccttccgaccaagaacggcggcggcgacgagctcgatgctgctcctccaccgcttgggtatgataaggcgatttacaagattaatgggtcggcggcgccggagcggaggagtagagtggatgagtttttgaactcggagaatgagaaatcggactacgattggctaattactccacctgctaccccactatttccatccttggagatggaaccgcaaaagacttcagttagtcagattgaggaacctaatgcgcgtgattctgctcctccaaaatctagggtaagaactctagctaacataagttctgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

5.03

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031237)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002976.1_g000003 Rmu_sc0003073.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 2 cut(s) 75, 211
AccB7I CCANNNNNTGG 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 2 cut(s) 81, 370
AciI CCGC 8 cut(s) 73, 79, 135, 138, 167, 209, 220, 329
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 2 cut(s) 76, 212
AfiI CCNNNNNNNGG 2 cut(s) 85, 170
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 4 cut(s) 12, 52, 148, 410
AluI AGCT 4 cut(s) 12, 52, 148, 410
Alw21I GWGCWC 2 cut(s) 54, 150
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 155
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 3 cut(s) 78, 214, 370
AvaI CYCGRG 1 cut(s) 65
BanI GGYRCC 2 cut(s) 75, 211
BanII GRGCYC 2 cut(s) 54, 150
Bbv12I GWGCWC 2 cut(s) 54, 150
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 316, 319
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 2 cut(s) 393, 407
BfoI RGCGCY 2 cut(s) 79, 215
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 6 cut(s) 74, 79, 136, 139, 156, 210
BlsI GCNGC 6 cut(s) 75, 80, 137, 140, 157, 211
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 4 cut(s) 77, 213, 327, 360
BmsI GCATC 2 cut(s) 60, 142
BsaHI GRCGYC 2 cut(s) 76, 212
BsaJI CCNNGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 170
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 241, 311
BseLI CCNNNNNNNGG 2 cut(s) 85, 170
BseRI GAGGAG 3 cut(s) 150, 238, 372
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 81, 370
BshNI GGYRCC 2 cut(s) 75, 211
BsiHKAI GWGCWC 2 cut(s) 54, 150
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 85, 170
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 54, 150
BspACI CCGC 8 cut(s) 73, 79, 135, 138, 167, 209, 220, 329
BspFNI CGCG 2 cut(s) 81, 370
BspLI GGNNCC 4 cut(s) 77, 213, 327, 360
BspMI ACCTGC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 2 cut(s) 75, 211
BsrBI CCGCTC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 315
BssNI GRCGYC 2 cut(s) 76, 212
BssT1I CCWWGG 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 76, 212
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 2 cut(s) 241, 311
BstFNI CGCG 2 cut(s) 81, 370
BstH2I RGCGCY 2 cut(s) 79, 215
BstHHI GCGC 3 cut(s) 78, 214, 370
BstMAI GTCTC 1 cut(s) 36
BstUI CGCG 2 cut(s) 81, 370
BstV1I GCAGC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 241, 311
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 3 cut(s) 78, 214, 370
CviJI RGCY 5 cut(s) 12, 52, 148, 280, 410
CviKI_1 RGCY 5 cut(s) 12, 52, 148, 280, 410
DinI GGCGCC 2 cut(s) 77, 213
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Ecl136II GAGCTC 2 cut(s) 52, 148
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 54, 150
Eco53kI GAGCTC 2 cut(s) 52, 148
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 2 cut(s) 52, 148
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 54, 150
EgeI GGCGCC 2 cut(s) 77, 213
EheI GGCGCC 2 cut(s) 77, 213
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 36
FaiI YATR 3 cut(s) 177, 416, 427
Fnu4HI GCNGC 6 cut(s) 74, 79, 136, 139, 156, 210
FokI GGATG 2 cut(s) 248, 298
FriOI GRGCYC 2 cut(s) 54, 150
Fsp4HI GCNGC 6 cut(s) 74, 79, 136, 139, 156, 210
FspBI CTAG 2 cut(s) 393, 407
GlaI GCGC 3 cut(s) 77, 213, 369
GluI GCNGC 6 cut(s) 74, 79, 136, 139, 156, 210
HaeII RGCGCY 2 cut(s) 79, 215
HapII CCGG 1 cut(s) 215
HhaI GCGC 3 cut(s) 78, 214, 370
Hin1I GRCGYC 2 cut(s) 76, 212
Hin6I GCGC 3 cut(s) 76, 212, 368
HinP1I GCGC 3 cut(s) 76, 212, 368
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 123, 253, 268, 351
Hpy188III TCNNGA 3 cut(s) 16, 65, 67
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 13, 128
HpyCH4V TGCA 1 cut(s) 425
Hsp92I GRCGYC 2 cut(s) 76, 212
HspAI GCGC 3 cut(s) 76, 212, 368
KasI GGCGCC 2 cut(s) 75, 211
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 4 cut(s) 120, 163, 217, 385
LpnPI CCDG 2 cut(s) 228, 306
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 60, 142
MaeI CTAG 2 cut(s) 393, 407
MbiI CCGCTC 1 cut(s) 220
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 54, 150
MluCI AATT 1 cut(s) 282
Mly113I GGCGCC 2 cut(s) 76, 212
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 171, 216, 349, 393
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 215
MvnI CGCG 2 cut(s) 81, 370
NarI GGCGCC 2 cut(s) 76, 212
NlaIV GGNNCC 4 cut(s) 77, 213, 327, 360
PaeR7I CTCGAG 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 138
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 6 cut(s) 75, 80, 137, 140, 157, 211
PluTI GGCGCC 2 cut(s) 79, 215
PshBI ATTAAT 1 cut(s) 198
Psp124BI GAGCTC 2 cut(s) 54, 150
PspN4I GGNNCC 4 cut(s) 77, 213, 327, 360
SacI GAGCTC 2 cut(s) 54, 150
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 6 cut(s) 74, 79, 136, 139, 156, 210
SduI GDGCHC 2 cut(s) 54, 150
SetI ASST 7 cut(s) 14, 24, 54, 150, 295, 364, 412
SfaNI GCATC 2 cut(s) 60, 142
SfoI GGCGCC 2 cut(s) 77, 213
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 282
SsiI CCGC 8 cut(s) 73, 79, 135, 138, 167, 209, 220, 329
SspDI GGCGCC 2 cut(s) 75, 211
SspMI CTAG 2 cut(s) 393, 407
SstI GAGCTC 2 cut(s) 54, 150
StyI CCWWGG 1 cut(s) 315
TaqI TCGA 2 cut(s) 66, 150
TasI AATT 1 cut(s) 282
TauI GCSGC 5 cut(s) 76, 81, 138, 141, 212
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 170
VspI ATTAAT 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 2 cut(s) 393, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.