Rmu_sc0003092.1_g000002

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003092.1
N/A
Physical Location & Seq
Reverse (-)
5543 .. 7401
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
atggcagcgggcaccaatgctggttccctaagtgtaggctatctgttcattgagttcctcctcttgatcgatgactattttctttgggggagccatttctgggttttccgagaggaagatgttcggagcaagaagtgtcgcgaagagatcacaaccaaagcccttacccgtaaggcaagaagtccatttccggaaggcaaagaaaagaaccctgtgacaaggttggtgctctccccgtctacaacgctagaaaagaagtcaggtcaagggactcccagacgactgcatcccacggtgctggcacgcctgggcaatcacatcagcaaagatacagtttccttcgccctactccattccactcatgcacaaaactcaccccaggactacctcaatgcccacaacagtgctcgagccgtcattggcgtgggaggcttgacatggaacactaatctagctatttatgcgcaaagatatgctaattcacatattggtgattgcaaccttgtgcattctggtgggccttacggggaaaaccttgcaaagagcaccggtgacttatcaggcacatctgctgtgaacttgtgggtaggagagaaggcaaactatgattacaactctaacacatgtgcttctggcaaggtctgtgggcattatacgcaggtcgtttggcgcaactcggcacgtgtggggtgtgccaaagtgaggtgcaacaatggaggtactttcatcgggtgcaattatgatccccggggaaacatcgttggtcggaagccttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

259

Amino Acids

28.37

Weight (kDa)

9.4

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 130 - 247 1.2e-14 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 737
AcvI CACGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 2 cut(s) 100, 702
AflIII ACRYGT 2 cut(s) 623, 682
AgeI ACCGGT 1 cut(s) 548
AjnI CCWGG 2 cut(s) 306, 378
AleI CACNNNNGTG 1 cut(s) 402
AluBI AGCT 1 cut(s) 455
AluI AGCT 1 cut(s) 455
Alw21I GWGCWC 3 cut(s) 231, 409, 548
AlwI GGATC 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 408, 747
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 548
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 466, 672
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 2 cut(s) 748, 749
AsuHPI GGTGA 3 cut(s) 366, 503, 563
AvaI CYCGRG 2 cut(s) 408, 747
BaeGI GKGCMC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 11
BbrPI CACGTG 1 cut(s) 683
Bbv12I GWGCWC 3 cut(s) 231, 409, 548
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 2 cut(s) 308, 380
BcnI CCSGG 2 cut(s) 748, 749
BfaI CTAG 2 cut(s) 248, 452
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 308, 380, 748, 749
BmeT110I CYCGRG 2 cut(s) 408, 747
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 3 cut(s) 13, 25, 92
BmrFI CCNGG 4 cut(s) 308, 380, 748, 749
BmsI GCATC 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 748, 749
Bsa29I ATCGAT 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 683
BsaJI CCNNGG 6 cut(s) 291, 307, 378, 746, 747, 748
BsaWI WCCGGW 2 cut(s) 190, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 702
Bse118I RCCGGY 1 cut(s) 548
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 2 cut(s) 308, 380
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 6 cut(s) 291, 307, 378, 746, 747, 748
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 100, 702
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 548
BshVI ATCGAT 1 cut(s) 69
BsiHKAI GWGCWC 3 cut(s) 231, 409, 548
BsiHKCI CYCGRG 2 cut(s) 408, 747
BsiSI CCGG 3 cut(s) 191, 549, 748
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 100, 702
BsmFI GGGAC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 1 cut(s) 520
BsoBI CYCGRG 2 cut(s) 408, 747
Bsp1286I GDGCHC 4 cut(s) 14, 231, 409, 548
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 66, 147, 742
Bsp68I TCGCGA 1 cut(s) 141
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 520
BspDI ATCGAT 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 13, 25, 92
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 6 cut(s) 291, 307, 378, 746, 747, 748
BssMI GATC 3 cut(s) 66, 147, 742
Bst2UI CCWGG 2 cut(s) 308, 380
Bst4CI ACNGT 3 cut(s) 295, 334, 404
Bst6I CTCTTC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 3 cut(s) 10, 300, 304
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 466, 672
BstKTI GATC 3 cut(s) 69, 150, 745
BstMBI GATC 3 cut(s) 66, 147, 742
BstMWI GCNNNNNNNGC 3 cut(s) 429, 461, 655
BstNI CCWGG 2 cut(s) 308, 380
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 4 cut(s) 306, 378, 746, 747
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 1 cut(s) 520
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 409
BtuMI TCGCGA 1 cut(s) 141
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 10, 300, 304
CfoI GCGC 2 cut(s) 466, 672
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 518
Cfr9I CCCGGG 1 cut(s) 747
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 720
CspAI ACCGGT 1 cut(s) 548
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 3 cut(s) 362, 438, 624
CviJI RGCY 8 cut(s) 39, 93, 161, 413, 432, 455, 520, 772
CviKI_1 RGCY 8 cut(s) 39, 93, 161, 413, 432, 455, 520, 772
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 1 cut(s) 29
DpnI GATC 3 cut(s) 68, 149, 744
DpnII GATC 3 cut(s) 66, 147, 742
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 683
Eco88I CYCGRG 2 cut(s) 408, 747
EcoRII CCWGG 2 cut(s) 306, 378
FaeI CATG 3 cut(s) 365, 441, 627
FaiI YATR 9 cut(s) 363, 439, 462, 474, 486, 606, 625, 654, 741
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 361, 437, 623
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 248, 452
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 2 cut(s) 465, 671
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 520
HapII CCGG 3 cut(s) 191, 549, 748
HhaI GCGC 2 cut(s) 466, 672
Hin1II CATG 3 cut(s) 365, 441, 627
Hin6I GCGC 2 cut(s) 464, 670
HinP1I GCGC 2 cut(s) 464, 670
HinfI GANTC 1 cut(s) 271
HpaII CCGG 3 cut(s) 191, 549, 748
HphI GGTGA 3 cut(s) 366, 503, 563
Hpy166II GTNNAC 2 cut(s) 240, 577
Hpy188I TCNGA 3 cut(s) 110, 126, 768
Hpy188III TCNNGA 3 cut(s) 64, 140, 191
Hpy8I GTNNAC 2 cut(s) 240, 577
HpyAV CCTTC 3 cut(s) 188, 349, 589
HpyCH4III ACNGT 3 cut(s) 295, 334, 404
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 7 cut(s) 286, 365, 498, 508, 539, 708, 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 429, 461, 655
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 3 cut(s) 365, 441, 627
HspAI GCGC 2 cut(s) 464, 670
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 66, 147, 742
LmnI GCTCC 2 cut(s) 90, 126
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 248, 452
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 2 cut(s) 214, 551
MalI GATC 3 cut(s) 68, 149, 744
MboI GATC 3 cut(s) 66, 147, 742
MboII GAAGA 2 cut(s) 128, 155
MhlI GDGCHC 4 cut(s) 14, 231, 409, 548
MluCI AATT 2 cut(s) 478, 736
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 746
MnlI CCTC 7 cut(s) 68, 71, 106, 398, 422, 696, 710
MroI TCCGGA 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 120
MslI CAYNNNNRTG 4 cut(s) 402, 422, 489, 513
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 3 cut(s) 191, 549, 748
MspR9I CCNGG 4 cut(s) 308, 380, 748, 749
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 2 cut(s) 308, 380
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 429, 461, 655
NciI CCSGG 2 cut(s) 748, 749
NdeII GATC 3 cut(s) 66, 147, 742
NlaIII CATG 3 cut(s) 365, 441, 627
NlaIV GGNNCC 3 cut(s) 13, 25, 92
NmeAIII GCCGAG 1 cut(s) 656
NmuCI GTSAC 2 cut(s) 214, 551
NruI TCGCGA 1 cut(s) 141
NsbI TGCGCA 1 cut(s) 465
NspI RCATGY 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 402
PaeR7I CTCGAG 1 cut(s) 408
PciI ACATGT 1 cut(s) 623
PctI GAATGC 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 548
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 265
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 683
PscI ACATGT 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 306, 378
PspCI CACGTG 1 cut(s) 683
PspGI CCWGG 2 cut(s) 306, 378
PspN4I GGNNCC 3 cut(s) 13, 25, 92
PspPI GGNCC 1 cut(s) 518
PspXI VCTCGAGB 1 cut(s) 408
RruI TCGCGA 1 cut(s) 141
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 4 cut(s) 402, 422, 489, 513
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 66, 147, 742
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 4 cut(s) 308, 380, 748, 749
SduI GDGCHC 4 cut(s) 14, 231, 409, 548
SfaNI GCATC 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 408
SgrAI CRCCGGYG 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 408
SmaI CCCGGG 1 cut(s) 749
SmiMI CAYNNNNRTG 4 cut(s) 402, 422, 489, 513
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 2 cut(s) 478, 736
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 248, 452
StyD4I CCNGG 4 cut(s) 306, 378, 746, 747
TaaI ACNGT 3 cut(s) 295, 334, 404
TaiI ACGT 1 cut(s) 685
TaqI TCGA 2 cut(s) 69, 409
TasI AATT 2 cut(s) 478, 736
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 214, 551
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 214, 551
TspDTI ATGAA 2 cut(s) 37, 715
TspMI CCCGGG 1 cut(s) 747
TspRI CASTG 1 cut(s) 409
XceI RCATGY 1 cut(s) 627
XhoI CTCGAG 1 cut(s) 408
XmaI CCCGGG 1 cut(s) 747
XmiI GTMKAC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 248, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.