Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003096.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30518 .. 34546

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003096.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcccataaccgattcgaacagaccgagtggtaggcctagctctgttcataaagctgcagcgggttttttgattcgtaatattcatggttctcctatcctatctaggatttatggacatctttgtagcggaggcaatggcacttcgtcacggtttgcaatccttgctccatatcgtctttcagatcttattgtagaaggggtttcgaaaatcctgatcgacgctctaaatgaccggatagatattccttggagaattaagtttctggtgcaagatattcagatcctcgctcgacaatttccaaggatttcattccatcatatttttaaattggctgattttgtggctgattctttggcaaatttgggtcatcctaatcgagacaaccctgtccctgatacctctggagtgctatccattaatggaaatggaggtcttgtcatctatggaagtgaccaaagtttccctctttggtctgctaatgttactctctcttctccaaacaattcaattgcaaagcttctggatacaggaaatcttgtcttggttgacaatggggataggcaaagggtgttgtggcaaggctttgattatcccacaaatatactgcttccatttatgaaacttgggttgaaccggcggtcggggctgaaccggttcctacatcttggaagtccaaagatgacccaggaaccgggaactgttcatatggagttcaaccaagagcagtggcggaccgaggtaggggcgagcgggggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

253

Amino Acids

27.82

Weight (kDa)

9.41

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	753
AciI	CCGC	5 cut(s)	62, 129, 640, 733, 753
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	361
AfiI	CCNNNNNNNGG	3 cut(s)	643, 694, 744
AgeI	ACCGGT	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	510, 634, 718
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	3 cut(s)	42, 56, 520
AluI	AGCT	3 cut(s)	42, 56, 520
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	56, 59
ApoI	RAATTY	1 cut(s)	361
AseI	ATTAAT	1 cut(s)	420
AsiGI	ACCGGT	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	1 cut(s)	696
AsuII	TTCGAA	2 cut(s)	17, 206
AvaII	GGWCC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	43, 71
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	39, 105
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
Bme1390I	CCNGG	2 cut(s)	689, 696
Bme18I	GGWCC	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	2 cut(s)	659, 693
BmrFI	CCNGG	2 cut(s)	689, 696
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	17, 206
BpuMI	CCSGG	1 cut(s)	696
BsaJI	CCNNGG	4 cut(s)	248, 302, 687, 738
BsaWI	WCCGGW	2 cut(s)	234, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	643, 694, 744
Bse118I	RCCGGY	2 cut(s)	636, 654
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	4 cut(s)	248, 302, 687, 738
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	3 cut(s)	643, 694, 744
BseMI	GCAATG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	43, 71
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	37
BshTI	ACCGGT	1 cut(s)	654
BsiEI	CGRYCG	1 cut(s)	644
BsiSI	CCGG	4 cut(s)	235, 637, 655, 695
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	643, 694, 744
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	37
Bsp119I	TTCGAA	2 cut(s)	17, 206
Bsp143I	GATC	3 cut(s)	184, 216, 282
BspACI	CCGC	5 cut(s)	62, 129, 640, 733, 753
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	659, 693
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	1 cut(s)	277
BspT104I	TTCGAA	2 cut(s)	17, 206
BsrBI	CCGCTC	1 cut(s)	753
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	636, 654
BssAI	RCCGGY	2 cut(s)	636, 654
BssECI	CCNNGG	4 cut(s)	248, 302, 687, 738
BssMI	GATC	3 cut(s)	184, 216, 282
BssT1I	CCWWGG	2 cut(s)	248, 302
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	2 cut(s)	153, 703
Bst6I	CTCTTC	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBI	TTCGAA	2 cut(s)	17, 206
BstC8I	GCNNGC	1 cut(s)	751
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	3 cut(s)	187, 219, 285
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	184, 216, 282
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 646
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	687, 694
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	43, 71
BstX2I	RGATCY	2 cut(s)	184, 282
BstYI	RGATCY	2 cut(s)	184, 282
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	1 cut(s)	734
Cac8I	GCNNGC	1 cut(s)	751
Cfr10I	RCCGGY	2 cut(s)	636, 654
Cfr13I	GGNCC	1 cut(s)	735
CpoI	CGGWCCG	1 cut(s)	735
CseI	GACGC	1 cut(s)	230
CspAI	ACCGGT	1 cut(s)	654
CspCI	CAANNNNNGTGG	2 cut(s)	710, 745
CspI	CGGWCCG	1 cut(s)	735
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	9 cut(s)	37, 42, 56, 335, 347, 520, 585, 649, 759
CviKI_1	RGCY	9 cut(s)	37, 42, 56, 335, 347, 520, 585, 649, 759
DpnI	GATC	3 cut(s)	186, 218, 284
DpnII	GATC	3 cut(s)	184, 216, 282
DraI	TTTAAA	1 cut(s)	328
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
EciI	GGCGGA	1 cut(s)	748
Eco130I	CCWWGG	2 cut(s)	248, 302
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	248, 302
ErhI	CCWWGG	2 cut(s)	248, 302
FaeI	CATG	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	85
FauI	CCCGC	2 cut(s)	55, 746
FauNDI	CATATG	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	57, 60
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	57, 60
FspBI	CTAG	2 cut(s)	39, 105
GluI	GCNGC	2 cut(s)	57, 60
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	4 cut(s)	235, 637, 655, 695
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	14, 73, 350
HpaII	CCGG	4 cut(s)	235, 637, 655, 695
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	184, 282
Hpy188III	TCNNGA	4 cut(s)	214, 380, 405, 524
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	153, 703
HpyCH4V	TGCA	4 cut(s)	59, 158, 271, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 646
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	184, 216, 282
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	43, 71
MaeI	CTAG	2 cut(s)	39, 105
MaeIII	GTNAC	3 cut(s)	147, 452, 484
MalI	GATC	3 cut(s)	186, 218, 284
MbiI	CCGCTC	1 cut(s)	753
MboI	GATC	3 cut(s)	184, 216, 282
MboII	GAAGA	1 cut(s)	486
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	184, 282
MluCI	AATT	6 cut(s)	255, 296, 329, 361, 505, 510
MnlI	CCTC	6 cut(s)	125, 296, 412, 425, 477, 733
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	3 cut(s)	258, 327, 420
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	4 cut(s)	235, 637, 655, 695
MspR9I	CCNGG	2 cut(s)	689, 696
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	2 cut(s)	164, 646
NciI	CCSGG	1 cut(s)	696
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	3 cut(s)	184, 216, 282
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	659, 693
NmuCI	GTSAC	2 cut(s)	147, 452
NspV	TTCGAA	2 cut(s)	17, 206
PceI	AGGCCT	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	14, 73, 350
PinAI	ACCGGT	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	58, 61
PshBI	ATTAAT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	659, 693
PspPI	GGNCC	1 cut(s)	735
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	184, 282
Rsr2I	CGGWCCG	1 cut(s)	735
RsrII	CGGWCCG	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	258, 327, 420
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	3 cut(s)	184, 216, 282
Sau96I	GGNCC	1 cut(s)	735
ScrFI	CCNGG	2 cut(s)	689, 696
SetI	ASST	6 cut(s)	44, 58, 404, 436, 522, 744
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	2 cut(s)	17, 206
SinI	GGWCC	1 cut(s)	735
Sse9I	AATT	6 cut(s)	255, 296, 329, 361, 505, 510
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	5 cut(s)	62, 129, 640, 733, 753
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	2 cut(s)	39, 105
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	687, 694
StyI	CCWWGG	2 cut(s)	248, 302
TaaI	ACNGT	2 cut(s)	153, 703
TaqI	TCGA	5 cut(s)	17, 206, 219, 292, 379
TaqII	GACCGA	2 cut(s)	40, 752
TasI	AATT	6 cut(s)	255, 296, 329, 361, 505, 510
TfiI	GAWTC	3 cut(s)	14, 73, 350
Tru1I	TTAA	3 cut(s)	258, 327, 420
Tru9I	TTAA	3 cut(s)	258, 327, 420
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	2 cut(s)	147, 452
TseI	GCWGC	2 cut(s)	56, 59
Tsp45I	GTSAC	2 cut(s)	147, 452
TspDTI	ATGAA	5 cut(s)	38, 74, 300, 635, 695
TspRI	CASTG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	735
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	39, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.