Rmu_sc0003113.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003113.1
N/A
Physical Location & Seq
Forward (+)
158423 .. 158875
453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
atgattctcgagcctagccaggacgtgctaactgttgagcaagctcaagctctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggtatagcctccgcttctgtgatttcaagtcagttcttgactataaatcggaagcacttcgcattaaatccttaatggaattctttggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccatctctgcattgatggttgctaagaactatcgaatcgatgtaaatgcaagacggatcacaaggttttgtgtgctcattggagctatgaatgtcgctaaaaagcatgacaatatccttgtgaagaactataattcgagatctgtggaaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

150

Amino Acids

17.59

Weight (kDa)

5.92

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 239
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 187
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 44, 50, 383
AluI AGCT 3 cut(s) 44, 50, 383
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 8
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 84, 287
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 3 cut(s) 153, 307, 308
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 15, 149
BglII AGATCT 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 84, 287
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 336
BseNI ACTGG 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 255, 354, 437
BspACI CCGC 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 336
BspPI GGATC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 55
BssMI GATC 3 cut(s) 255, 354, 437
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 321
BstKTI GATC 3 cut(s) 258, 357, 440
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 255, 354, 437
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 84, 287
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
Bsu15I ATCGAT 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 281
BtrI CACGTC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 404
CviJI RGCY 7 cut(s) 13, 18, 44, 50, 91, 168, 383
CviKI_1 RGCY 7 cut(s) 13, 18, 44, 50, 91, 168, 383
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 257, 356, 439
DpnII GATC 3 cut(s) 255, 354, 437
Eco31I GGTCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 407
FaiI YATR 8 cut(s) 66, 68, 165, 204, 386, 405, 429, 451
FatI CATG 1 cut(s) 403
FspBI CTAG 2 cut(s) 15, 149
GsuI CTGGAG 1 cut(s) 38
Hin1II CATG 1 cut(s) 407
HinfI GANTC 4 cut(s) 4, 131, 283, 333
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 4 cut(s) 8, 143, 197, 435
HpyAV CCTTC 2 cut(s) 81, 304
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 24, 123
HpyCH4V TGCA 2 cut(s) 308, 347
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 24, 123
Hsp92II CATG 1 cut(s) 407
Kzo9I GATC 3 cut(s) 255, 354, 437
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 5 cut(s) 5, 32, 68, 97, 156
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 15, 149
MaeII ACGT 2 cut(s) 24, 123
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 257, 356, 439
MboI GATC 3 cut(s) 255, 354, 437
MboII GAAGA 5 cut(s) 86, 89, 119, 292, 433
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 2 cut(s) 239, 430
MlyI GAGTC 2 cut(s) 125, 277
MnlI CCTC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 225, 233
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
NdeII GATC 3 cut(s) 255, 354, 437
NlaIII CATG 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 4, 333
PleI GAGTC 2 cut(s) 125, 277
PpsI GAGTC 2 cut(s) 125, 277
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 225, 233
Sau3AI GATC 3 cut(s) 255, 354, 437
SchI GAGTC 2 cut(s) 125, 277
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 375
SetI ASST 8 cut(s) 27, 46, 52, 126, 150, 296, 365, 385
SfaNI GCATC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 2 cut(s) 8, 45
SmoI CTYRAG 2 cut(s) 8, 45
Sse9I AATT 2 cut(s) 239, 430
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 15, 149
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 27, 126
TaqI TCGA 5 cut(s) 9, 105, 331, 336, 434
TasI AATT 2 cut(s) 239, 430
TfiI GAWTC 2 cut(s) 4, 333
Tru1I TTAA 2 cut(s) 225, 233
Tru9I TTAA 2 cut(s) 225, 233
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 83, 87, 401
TspGWI ACGGA 2 cut(s) 116, 367
XapI RAATTY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 15, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.