Rmu_sc0003116.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
N/A
Physical Location & Seq
Forward (+)
1 .. 553
553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
tttggagaacttcagctcgagcttacatcagaaaaagctactgttggggctatcatcagctttgccttcgggattctttcatggcaactggctcaaggcgtccaaaacaccccagagagttcattgcagtatgcaaacgacaatgctttgctgctggctaagtctttgaggggagctctacttgcagcctgctattcctcagccttattgtctgctttgactaccttcggacttatcttacttggaaggcaactaaagtcaccaaaagaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

91

Amino Acids

9.67

Weight (kDa)

8.1

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 13 - 85 8.1e-06 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 99
AluBI AGCT 5 cut(s) 16, 22, 38, 60, 176
AluI AGCT 5 cut(s) 16, 22, 38, 60, 176
Alw21I GWGCWC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 151, 185
AsuHPI GGTGA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 138, 197
BisI GCNGC 2 cut(s) 152, 186
BlsI GCNGC 2 cut(s) 153, 187
BmeT110I CYCGRG 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 160, 192
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 138, 197
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 156, 190
BstDEI CTNAG 2 cut(s) 159, 199
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 138, 197
Cac8I GCNNGC 2 cut(s) 156, 190
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 81
DdeI CTNAG 2 cut(s) 159, 199
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 84
FaiI YATR 2 cut(s) 82, 132
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 152, 186
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 152, 186
GluI GCNGC 2 cut(s) 152, 186
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 84
HinfI GANTC 1 cut(s) 73
HphI GGTGA 1 cut(s) 252
Hpy188I TCNGA 2 cut(s) 31, 230
Hpy188III TCNNGA 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 76, 235, 240
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 127, 134, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 159, 199
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 84
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 74, 126, 140, 202
Lsp1109I GCAGC 2 cut(s) 138, 197
MaeIII GTNAC 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 178
MnlI CCTC 2 cut(s) 162, 208
MwoI GCNNNNNNNGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 17
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 153, 187
Psp124BI GAGCTC 1 cut(s) 178
PspXI VCTCGAGB 1 cut(s) 17
SacI GAGCTC 1 cut(s) 178
SatI GCNGC 2 cut(s) 152, 186
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 18, 24, 40, 62, 178, 227
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 17, 93
SmoI CTYRAG 2 cut(s) 17, 93
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 18
TfiI GAWTC 1 cut(s) 73
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 2 cut(s) 151, 185
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 69, 111
XhoI CTCGAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.