Rmu_sc0003116.1_g000037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
N/A
Physical Location & Seq
Forward (+)
204224 .. 205547
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
atgtcagctagggtaaaggtaatagtgtcctttcagcaagcatacatgactaagaaagctattgtgcaacaacttgaaaagtccatgaaagaacagtatgcaagggtgcaagaatatgcaagtgagctgagaagggtggacccaaacacaactgttgaaatcaagtgtgatttcaacaatcctgacaagacccctaccaattttgggtgtggatggctgacacttgaagagtgcctatggaggtcaacttcttgctgcagtggagctggatgcaaacaacaccacctatgcggttatgtgtcagacacctatggaccaacttcaacaagttgtttcctggaaaaagccataaaggtccagctttggtcaattgtcaaatccatcactctgacttatttctggaaggagatggttttgattaagcagatggatgtagctgcttatgactggttaactgaccttgcacaaccttcaaggaaccctaagcactcgtgtgaattgctttgtcgtgtgaagtatgaagtactcgaacttggaaggaatacatatacgggtgtgcttcaaacacttgatgcttctagtccacatatttggatcagacaacaacttgtttatccgattctttgtccaattcctttcaagttccttcaacagagcgtgacggggatcaggtggagaaagattgacagatttgtagtgaagaaggaaatgaacatagttctgaatgatgctcaacctggcatacaaattgagagctcaaatgtgattaatgttgatgatgtagttcggatatcttggacctggcaactagttcaactctaccaacctctccacgacataatgttccgattaagttttgttgagatgacccggtcattatgtttagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

296

Amino Acids

34.27

Weight (kDa)

8.65

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 291
AclWI GGATC 2 cut(s) 602, 674
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 1 cut(s) 204
AhlI ACTAGT 1 cut(s) 808
AjnI CCWGG 3 cut(s) 336, 736, 800
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 7 cut(s) 8, 59, 127, 266, 361, 437, 756
AluI AGCT 7 cut(s) 8, 59, 127, 266, 361, 437, 756
Alw21I GWGCWC 1 cut(s) 758
AlwI GGATC 2 cut(s) 602, 674
ApeKI GCWGC 2 cut(s) 255, 437
AseI ATTAAT 1 cut(s) 768
AspS9I GGNCC 4 cut(s) 139, 314, 355, 798
AsuC2I CCSGG 1 cut(s) 871
AvaII GGWCC 4 cut(s) 139, 314, 355, 798
BanII GRGCYC 1 cut(s) 758
BauI CACGAG 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 2 cut(s) 242, 424
BccI CCATC 4 cut(s) 207, 389, 403, 421
BciT130I CCWGG 3 cut(s) 338, 738, 802
BcnI CCSGG 1 cut(s) 871
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 3 cut(s) 9, 579, 809
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 2 cut(s) 256, 438
BlsI GCNGC 2 cut(s) 257, 439
BmcAI AGTACT 1 cut(s) 525
Bme1390I CCNGG 4 cut(s) 338, 738, 802, 871
Bme18I GGWCC 4 cut(s) 139, 314, 355, 798
BmgT120I GGNCC 4 cut(s) 139, 314, 355, 798
BmiI GGNNCC 2 cut(s) 141, 479
BmrFI CCNGG 4 cut(s) 338, 738, 802, 871
BmsI GCATC 3 cut(s) 260, 562, 718
Bpu10I CCTNAGC 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 871
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 452
BseBI CCWGG 3 cut(s) 338, 738, 802
BseGI GGATG 3 cut(s) 218, 275, 436
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 2 cut(s) 242, 424
BsiHKAI GWGCWC 1 cut(s) 758
BsiSI CCGG 1 cut(s) 871
BslI CCNNNNNNNGG 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 758
Bsp143I GATC 2 cut(s) 594, 666
BspACI CCGC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 141, 479
BspMAI CTGCAG 1 cut(s) 260
BspPI GGATC 2 cut(s) 602, 674
BsrI ACTGG 1 cut(s) 452
BssMI GATC 2 cut(s) 594, 666
BssSI CACGAG 1 cut(s) 490
Bst2BI CACGAG 1 cut(s) 490
Bst2UI CCWGG 3 cut(s) 338, 738, 802
Bst4CI ACNGT 2 cut(s) 96, 154
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 51, 128, 483
BstF5I GGATG 3 cut(s) 218, 275, 436
BstKTI GATC 2 cut(s) 597, 669
BstMBI GATC 2 cut(s) 594, 666
BstNI CCWGG 3 cut(s) 338, 738, 802
BstSCI CCNGG 4 cut(s) 336, 736, 800, 869
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 242, 424
BstXI CCANNNNNNTGG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 218, 275, 436
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 4 cut(s) 139, 314, 355, 798
Csp6I GTAC 1 cut(s) 524
CviAII CATG 2 cut(s) 46, 85
CviJI RGCY 9 cut(s) 8, 59, 127, 217, 266, 347, 361, 437, 756
CviKI_1 RGCY 9 cut(s) 8, 59, 127, 217, 266, 347, 361, 437, 756
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 3 cut(s) 51, 128, 483
DpnI GATC 2 cut(s) 596, 668
DpnII GATC 2 cut(s) 594, 666
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 758
Eco32I GATATC 1 cut(s) 792
Eco47I GGWCC 4 cut(s) 139, 314, 355, 798
Eco53kI GAGCTC 1 cut(s) 756
EcoICRI GAGCTC 1 cut(s) 756
EcoRII CCWGG 3 cut(s) 336, 736, 800
EcoRV GATATC 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 758
FaeI CATG 2 cut(s) 49, 88
FatI CATG 2 cut(s) 45, 84
Fnu4HI GCNGC 2 cut(s) 256, 438
FokI GGATG 3 cut(s) 225, 282, 443
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 2 cut(s) 256, 438
FspBI CTAG 3 cut(s) 9, 579, 809
GluI GCNGC 2 cut(s) 256, 438
HapII CCGG 1 cut(s) 871
Hin1II CATG 2 cut(s) 49, 88
HincII GTYRAC 2 cut(s) 246, 453
HindII GTYRAC 2 cut(s) 246, 453
HinfI GANTC 1 cut(s) 619
HpaI GTTAAC 1 cut(s) 453
HpaII CCGG 1 cut(s) 871
Hpy166II GTNNAC 4 cut(s) 139, 246, 453, 584
Hpy188I TCNGA 8 cut(s) 304, 390, 599, 618, 723, 789, 848, 890
Hpy188III TCNNGA 2 cut(s) 182, 400
Hpy8I GTNNAC 4 cut(s) 139, 246, 453, 584
HpyAV CCTTC 6 cut(s) 126, 397, 480, 531, 656, 697
HpyCH4III ACNGT 2 cut(s) 96, 154
HpyCH4V TGCA 7 cut(s) 67, 101, 109, 119, 258, 273, 464
HpyF3I CTNAG 3 cut(s) 51, 128, 483
Hsp92II CATG 2 cut(s) 49, 88
KspAI GTTAAC 1 cut(s) 453
Kzo9I GATC 2 cut(s) 594, 666
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 2 cut(s) 242, 424
LweI GCATC 3 cut(s) 260, 562, 718
MaeI CTAG 3 cut(s) 9, 579, 809
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 596, 668
MboI GATC 2 cut(s) 594, 666
MboII GAAGA 2 cut(s) 239, 712
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 758
MluCI AATT 5 cut(s) 199, 369, 497, 630, 747
MnlI CCTC 2 cut(s) 234, 837
MseI TTAA 4 cut(s) 420, 452, 768, 851
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 871
MspR9I CCNGG 4 cut(s) 338, 738, 802, 871
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 3 cut(s) 338, 738, 802
NciI CCSGG 1 cut(s) 871
NdeII GATC 2 cut(s) 594, 666
NlaIII CATG 2 cut(s) 49, 88
NlaIV GGNNCC 2 cut(s) 141, 479
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 492
PfeI GAWTC 1 cut(s) 619
PflFI GACNNNGTC 1 cut(s) 871
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 2 cut(s) 257, 439
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 758
Psp6I CCWGG 3 cut(s) 336, 736, 800
PspGI CCWGG 3 cut(s) 336, 736, 800
PspN4I GGNNCC 2 cut(s) 141, 479
PspPI GGNCC 4 cut(s) 139, 314, 355, 798
PstI CTGCAG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 871
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 4 cut(s) 420, 452, 768, 851
SatI GCNGC 2 cut(s) 256, 438
Sau3AI GATC 2 cut(s) 594, 666
Sau96I GGNCC 4 cut(s) 139, 314, 355, 798
ScaI AGTACT 1 cut(s) 525
ScrFI CCNGG 4 cut(s) 338, 738, 802, 871
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 3 cut(s) 260, 562, 718
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 4 cut(s) 139, 314, 355, 798
SmiMI CAYNNNNRTG 1 cut(s) 492
SpeI ACTAGT 1 cut(s) 808
Sse9I AATT 5 cut(s) 199, 369, 497, 630, 747
SsiI CCGC 1 cut(s) 291
SspMI CTAG 3 cut(s) 9, 579, 809
SstI GAGCTC 1 cut(s) 758
StyD4I CCNGG 4 cut(s) 336, 736, 800, 869
TaaI ACNGT 2 cut(s) 96, 154
TaqI TCGA 1 cut(s) 528
TasI AATT 5 cut(s) 199, 369, 497, 630, 747
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 4 cut(s) 420, 452, 768, 851
Tru9I TTAA 4 cut(s) 420, 452, 768, 851
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 2 cut(s) 255, 437
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 3 cut(s) 101, 534, 725
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 871
VpaK11BI GGWCC 4 cut(s) 139, 314, 355, 798
VspI ATTAAT 1 cut(s) 768
XspI CTAG 3 cut(s) 9, 579, 809
ZrmI AGTACT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.