Rmu_sc0003131.1_g000013

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003131.1
N/A
Physical Location & Seq
Forward (+)
57370 .. 60335
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
atgggcgttttattcaaagaatgcgtgaaaaagctgcaactctttcaaagtaatcctcatttcccttcaagtattacaatttacaagacttgtattctatggattcgttctgtgattggtggtatctgtttcaagtttcaatcatttactcatgtcccatggaattcccattgcagtgtcaaattggaacaaggatcagtgacaacgctaatcaaggagaaggccattgtcaaaggggtgatttacaagaacaaggctggagaggagatgagaatatatgctccactaacaattgtgtgtgatggctgcttttcaaatctgcgcaaatctctcagtgatccaaaggttgaaagtccctcttgttttgttggtttggtgttagagaactgtgatcttccccatgcaaatcatggacatgtgattttgggagacccttcacccatcctgttttaccctattagttccactgagatttgttgtttggtcgatgtaccagggacaaaagtaccttcagttgctagtggtgaaatggctaactatttgaggactgtggtggctcctcaggttcccccacagctatacaatgcttttatggttgcagcagagaaaggaaacattagatccatgcaaaacaaaagcatggatgctaatcctgttcccactcctggagcaattttgatgggggattcattcagcatgtggcatcccttaacaggaggaggaatgatcgtggctcttttatacatagttcttctccgcgatcttcttagacccctacgtgatcttaatgatgcacctgctttatgcaattgccttgaatcattttatacattgcgcaaggtttttgctttgctgatgttgtgctccattttcattgcagcctgtgtcatctactataaacacatttacaacgtgttttgtgcatcacctgatccagcaagacaggaaatgcgtgaagcatgttttggctatttgagccttggaagaatctgttcctatggaccagtatctctgctctctggccgtaaccctcgtcccctacacttgttcctccatttctttgctgttgctatctatggtgttgggcgcttaatgcttccattcccttcacctcaacgcatgtggcttgggtttagattgatcttgagtgcatcaggcatcatatcccccgttataaagggagaaggagttagacagatgttctttccagcaacgaaccttctgagcacaaggtctgcagaagcattccctgttttatcaaggctaggagaccttgtgctccttcagacattcctggctcggttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

435

Amino Acids

48.12

Weight (kDa)

9.03

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 94 - 375 2e-98 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1175
AarI CACCTGC 1 cut(s) 805
Acc16I TGCGCA 2 cut(s) 323, 836
Acc36I ACCTGC 1 cut(s) 805
AccII CGCG 1 cut(s) 759
AciI CCGC 1 cut(s) 757
AclWI GGATC 4 cut(s) 202, 332, 615, 926
AcoI YGGCCR 1 cut(s) 1021
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 2 cut(s) 495, 1268
AfaI GTAC 2 cut(s) 492, 507
AfiI CCNNNNNNNGG 2 cut(s) 665, 713
AflIII ACRYGT 2 cut(s) 415, 912
AgsI TTSAA 8 cut(s) 16, 47, 69, 133, 140, 315, 350, 818
AjnI CCWGG 3 cut(s) 493, 664, 1293
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AluBI AGCT 2 cut(s) 34, 577
AluI AGCT 2 cut(s) 34, 577
Alw21I GWGCWC 3 cut(s) 866, 1229, 1281
Alw26I GTCTC 2 cut(s) 423, 1263
AlwI GGATC 4 cut(s) 202, 332, 615, 926
AoxI GGCC 2 cut(s) 222, 1021
ApeKI GCWGC 4 cut(s) 34, 306, 599, 878
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 991
AspLEI GCGC 3 cut(s) 324, 837, 1089
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 5 cut(s) 250, 429, 536, 918, 1101
AvaII GGWCC 1 cut(s) 1001
AxyI CCTNAGG 1 cut(s) 561
BaeI ACNNNNGTAYC 2 cut(s) 489, 522
Bbv12I GWGCWC 3 cut(s) 866, 1229, 1281
BbvI GCAGC 4 cut(s) 21, 293, 611, 890
BccI CCATC 3 cut(s) 296, 449, 673
BceAI ACGGC 1 cut(s) 1008
BciT130I CCWGG 3 cut(s) 495, 666, 1295
BcoDI GTCTC 2 cut(s) 423, 1263
BfaI CTAG 2 cut(s) 519, 1265
BfmI CTRYAG 1 cut(s) 1236
BfoI RGCGCY 1 cut(s) 1090
BfuAI ACCTGC 1 cut(s) 805
BisI GCNGC 4 cut(s) 35, 307, 600, 879
BlsI GCNGC 4 cut(s) 36, 308, 601, 880
Bme1390I CCNGG 3 cut(s) 495, 666, 1295
Bme18I GGWCC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 2 cut(s) 558, 567
BmrFI CCNGG 3 cut(s) 495, 666, 1295
BmsI GCATC 6 cut(s) 634, 712, 781, 932, 1160, 1167
BpmI CTGGAG 2 cut(s) 279, 687
BpuEI CTTGAG 1 cut(s) 1165
BsaAI YACGTR 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 648
BsaI GGTCTC 2 cut(s) 423, 1263
BsaJI CCNNGG 3 cut(s) 158, 494, 979
BsaXI ACNNNNNCTCC 4 cut(s) 1173, 1203, 1260, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 713
Bse1I ACTGG 1 cut(s) 1004
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 3 cut(s) 169, 830, 873
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 3 cut(s) 495, 666, 1295
BseDI CCNNGG 3 cut(s) 158, 494, 979
BseGI GGATG 3 cut(s) 441, 649, 703
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 665, 713
BseMI GCAATG 3 cut(s) 169, 830, 873
BseMII CTCAG 4 cut(s) 346, 459, 575, 1214
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 3 cut(s) 278, 549, 732
BseXI GCAGC 4 cut(s) 21, 293, 611, 890
Bsh1236I CGCG 1 cut(s) 759
BshFI GGCC 2 cut(s) 224, 1023
BsiHKAI GWGCWC 3 cut(s) 866, 1229, 1281
BslFI GGGAC 4 cut(s) 140, 339, 511, 1020
BslI CCNNNNNNNGG 2 cut(s) 665, 713
BsmAI GTCTC 2 cut(s) 423, 1263
BsmFI GGGAC 4 cut(s) 140, 339, 511, 1020
BsmI GAATGC 2 cut(s) 26, 1244
BsnI GGCC 2 cut(s) 224, 1023
Bso31I GGTCTC 2 cut(s) 423, 1263
Bsp1286I GDGCHC 3 cut(s) 866, 1229, 1281
Bsp143I GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 1 cut(s) 757
BspANI GGCC 2 cut(s) 224, 1023
BspCNI CTCAG 4 cut(s) 345, 460, 574, 1215
BspFNI CGCG 1 cut(s) 759
BspLI GGNNCC 2 cut(s) 558, 567
BspMAI CTGCAG 1 cut(s) 1240
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 4 cut(s) 202, 332, 615, 926
BspTNI GGTCTC 2 cut(s) 423, 1263
BsrDI GCAATG 3 cut(s) 169, 830, 873
BsrI ACTGG 1 cut(s) 1004
BssECI CCNNGG 3 cut(s) 158, 494, 979
BssMI GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
BssT1I CCWWGG 2 cut(s) 158, 979
Bst2UI CCWGG 3 cut(s) 495, 666, 1295
Bst4CI ACNGT 2 cut(s) 389, 550
BstBAI YACGTR 1 cut(s) 779
BstDEI CTNAG 5 cut(s) 332, 468, 561, 767, 1223
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 3 cut(s) 441, 649, 703
BstFNI CGCG 1 cut(s) 759
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 3 cut(s) 324, 837, 1089
BstKTI GATC 9 cut(s) 197, 340, 394, 623, 729, 763, 784, 934, 1143
BstMAI GTCTC 2 cut(s) 423, 1263
BstMBI GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
BstMWI GCNNNNNNNGC 2 cut(s) 975, 1093
BstNI CCWGG 3 cut(s) 495, 666, 1295
BstNSI RCATGY 4 cut(s) 419, 700, 963, 1123
BstSCI CCNGG 3 cut(s) 493, 664, 1293
BstSFI CTRYAG 1 cut(s) 1236
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 4 cut(s) 21, 293, 611, 890
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 2 cut(s) 224, 1023
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 3 cut(s) 441, 649, 703
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 4 cut(s) 181, 204, 340, 465
BveI ACCTGC 1 cut(s) 805
CfoI GCGC 3 cut(s) 324, 837, 1089
Cfr13I GGNCC 1 cut(s) 1001
Csp6I GTAC 2 cut(s) 491, 506
CspCI CAANNNNNGTGG 2 cut(s) 1103, 1138
CviQI GTAC 2 cut(s) 491, 506
DdeI CTNAG 5 cut(s) 332, 468, 561, 767, 1223
DpnI GATC 9 cut(s) 196, 339, 393, 622, 728, 762, 783, 933, 1142
DpnII GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
EaeI YGGCCR 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 158, 979
Eco31I GGTCTC 2 cut(s) 423, 1263
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 2 cut(s) 495, 1268
Eco81I CCTNAGG 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 3 cut(s) 493, 664, 1293
EcoT14I CCWWGG 2 cut(s) 158, 979
ErhI CCWWGG 2 cut(s) 158, 979
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 4 cut(s) 140, 339, 511, 1020
Fnu4HI GCNGC 4 cut(s) 35, 307, 600, 879
FokI GGATG 3 cut(s) 428, 656, 690
Fsp4HI GCNGC 4 cut(s) 35, 307, 600, 879
FspBI CTAG 2 cut(s) 519, 1265
FspI TGCGCA 2 cut(s) 323, 836
GlaI GCGC 3 cut(s) 323, 836, 1088
GluI GCNGC 4 cut(s) 35, 307, 600, 879
GsuI CTGGAG 2 cut(s) 279, 687
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 2 cut(s) 224, 1023
HhaI GCGC 3 cut(s) 324, 837, 1089
Hin6I GCGC 3 cut(s) 322, 835, 1087
HinP1I GCGC 3 cut(s) 322, 835, 1087
HinfI GANTC 4 cut(s) 103, 686, 818, 987
HphI GGTGA 5 cut(s) 250, 429, 536, 918, 1101
Hpy188I TCNGA 2 cut(s) 1224, 1287
Hpy188III TCNNGA 1 cut(s) 1144
HpyAV CCTTC 8 cut(s) 75, 214, 444, 519, 1116, 1178, 1229, 1292
HpyCH4III ACNGT 2 cut(s) 389, 550
HpyCH4IV ACGT 2 cut(s) 778, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 975, 1093
HpyF3I CTNAG 5 cut(s) 332, 468, 561, 767, 1223
HpySE526I ACGT 2 cut(s) 778, 912
HspAI GCGC 3 cut(s) 322, 835, 1087
Kzo9I GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
LmnI GCTCC 5 cut(s) 286, 562, 668, 869, 1284
Lsp1109I GCAGC 4 cut(s) 21, 293, 611, 890
LweI GCATC 6 cut(s) 634, 712, 781, 932, 1160, 1167
MaeI CTAG 2 cut(s) 519, 1265
MaeII ACGT 2 cut(s) 778, 912
MaeIII GTNAC 2 cut(s) 199, 1025
MalI GATC 9 cut(s) 196, 339, 393, 622, 728, 762, 783, 933, 1142
MboI GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
MboII GAAGA 4 cut(s) 386, 743, 755, 996
MfeI CAATTG 2 cut(s) 291, 808
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 3 cut(s) 866, 1229, 1281
MluCI AATT 6 cut(s) 78, 163, 182, 291, 672, 808
MroXI GAANNNNTTC 1 cut(s) 991
MseI TTAA 3 cut(s) 710, 786, 1091
MslI CAYNNNNRTG 2 cut(s) 174, 414
MspR9I CCNGG 3 cut(s) 495, 666, 1295
MunI CAATTG 2 cut(s) 291, 808
Mva1269I GAATGC 2 cut(s) 26, 1244
MvaI CCWGG 3 cut(s) 495, 666, 1295
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 2 cut(s) 975, 1093
NcoI CCATGG 1 cut(s) 158
NdeII GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
NlaIV GGNNCC 2 cut(s) 558, 567
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 2 cut(s) 323, 836
NspI RCATGY 4 cut(s) 419, 700, 963, 1123
PaqCI CACCTGC 1 cut(s) 805
PciI ACATGT 1 cut(s) 415
PctI GAATGC 2 cut(s) 26, 1244
PdmI GAANNNNTTC 1 cut(s) 991
PfeI GAWTC 4 cut(s) 103, 686, 818, 987
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 4 cut(s) 36, 308, 601, 880
Ppu21I YACGTR 1 cut(s) 779
PscI ACATGT 1 cut(s) 415
PsiI TTATAA 1 cut(s) 1175
Psp6I CCWGG 3 cut(s) 493, 664, 1293
PspGI CCWGG 3 cut(s) 493, 664, 1293
PspN4I GGNNCC 2 cut(s) 558, 567
PspPI GGNCC 1 cut(s) 1001
PstI CTGCAG 1 cut(s) 1240
PsuI RGATCY 1 cut(s) 620
RsaI GTAC 2 cut(s) 492, 507
RsaNI GTAC 2 cut(s) 491, 506
RseI CAYNNNNRTG 2 cut(s) 174, 414
SaqAI TTAA 3 cut(s) 710, 786, 1091
SatI GCNGC 4 cut(s) 35, 307, 600, 879
Sau3AI GATC 9 cut(s) 194, 337, 391, 620, 726, 760, 781, 931, 1140
Sau96I GGNCC 1 cut(s) 1001
ScrFI CCNGG 3 cut(s) 495, 666, 1295
SduI GDGCHC 3 cut(s) 866, 1229, 1281
SfaNI GCATC 6 cut(s) 634, 712, 781, 932, 1160, 1167
SfcI CTRYAG 1 cut(s) 1236
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 2 cut(s) 174, 414
SmlI CTYRAG 1 cut(s) 1144
SmoI CTYRAG 1 cut(s) 1144
Sse9I AATT 6 cut(s) 78, 163, 182, 291, 672, 808
SsiI CCGC 1 cut(s) 757
SspMI CTAG 2 cut(s) 519, 1265
StyD4I CCNGG 3 cut(s) 493, 664, 1293
StyI CCWWGG 2 cut(s) 158, 979
TaaI ACNGT 2 cut(s) 389, 550
TaiI ACGT 2 cut(s) 781, 915
TaqI TCGA 1 cut(s) 486
TasI AATT 6 cut(s) 78, 163, 182, 291, 672, 808
TfiI GAWTC 4 cut(s) 103, 686, 818, 987
Tru1I TTAA 3 cut(s) 710, 786, 1091
Tru9I TTAA 3 cut(s) 710, 786, 1091
TscAI CASTG 4 cut(s) 181, 204, 340, 472
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 4 cut(s) 34, 306, 599, 878
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 678, 862
TspRI CASTG 4 cut(s) 181, 204, 340, 472
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 1 cut(s) 163
XceI RCATGY 4 cut(s) 419, 700, 963, 1123
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 991
XspI CTAG 2 cut(s) 519, 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.