Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003142.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7958 .. 10329

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003142.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgttgagtatctactcggtgatgcaagagatcacaccacaagtccttatccgtaaggcaagaagtcctttttccgaaaggcatagaaaagaacctggtgacaaggttgtgctctcctcctccgcagagtttgatcaagaagtcaggtcaagggacgccccgacgactgcaccccaaggtgttggcacgcttgcgcaatcaaaagagactgaagacatttcgtgtatgggccatgatatcgctgcgcaaaaatggaatttcaacggtggttcttgtcaaaatattgatggtggtcatacatgctacttgagtatagatagcgttgcttgtgaatttcatggtggttggagtggggctgtatgctccacaaccagaccctataatcttggtctgttccataagcgcaaccagttgagccccgctgtttttgagactgaagttcctattgtagtgtatgaattcatacctaatggaacgctcttccagtatatccatgagaagaatgaggaatttccactaacatggaaaatgcgcttacgtattgccacaaaaattgctggagctctttcctacttacatgctacagcttcatgtcccatttatcacagagacattaagtctagcaacattctcttagatgaaaaatacagagctaaaattgcagactttggaacttcaagattagttgctattgaccaaactcaatacttgaccatagttgtacatgggacattcagttacttggaccatgagtacttccgatcaagcaaatttatggagaaaagtgacgtgtatagcttcagggtcgtccttgttgggctcttaacagggaagaaaccagattccgtgataaacgttttaaaggagagttctaaaaaagatattagaatagttgctaaccttgcaaagaaatgtttggatttgaatggaaggaagcgccctacaatgagagaggccacaactgagttggaagtcatccaaatatcgaaaacaacttcaattattgaacaaatttatgaaggtgttgaacttccatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

346

Amino Acids

38.91

Weight (kDa)

8.04

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	195, 246
AciI	CCGC	2 cut(s)	123, 420
AclI	AACGTT	1 cut(s)	855
AcsI	RAATTY	6 cut(s)	256, 332, 458, 509, 770, 1011
AcuI	CTGAAG	3 cut(s)	231, 456, 784
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	723, 755
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	6 cut(s)	262, 678, 925, 999, 1007, 1028
AhdI	GACNNNNNGTC	1 cut(s)	616
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	4 cut(s)	563, 587, 653, 798
AluI	AGCT	4 cut(s)	563, 587, 653, 798
Alw21I	GWGCWC	2 cut(s)	114, 565
Alw26I	GTCTC	3 cut(s)	200, 425, 603
AoxI	GGCC	2 cut(s)	229, 954
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	6 cut(s)	256, 332, 458, 509, 770, 1011
AspLEI	GCGC	5 cut(s)	196, 247, 405, 534, 939
AspS9I	GGNCC	2 cut(s)	229, 745
AsuHPI	GGTGA	2 cut(s)	31, 110
AvaII	GGWCC	1 cut(s)	745
BanII	GRGCYC	3 cut(s)	419, 565, 822
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	114, 565
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	200, 425, 603
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	940
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	745
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	229, 745
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	409, 484
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	975
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	2 cut(s)	409, 484
BseRI	GAGGAG	2 cut(s)	106, 109
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	231, 956
BsiHKAI	GWGCWC	2 cut(s)	114, 565
BslFI	GGGAC	3 cut(s)	167, 579, 742
BsmAI	GTCTC	3 cut(s)	200, 425, 603
BsmFI	GGGAC	3 cut(s)	167, 579, 742
BsnI	GGCC	2 cut(s)	231, 956
Bsp1286I	GDGCHC	4 cut(s)	114, 419, 565, 822
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	30, 133, 761
BspACI	CCGC	2 cut(s)	123, 420
BspANI	GGCC	2 cut(s)	231, 956
BspCNI	CTCAG	1 cut(s)	955
BspQI	GCTCTTC	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	409, 484
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	30, 133, 761
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	188, 192
BstDEI	CTNAG	2 cut(s)	634, 963
BstF5I	GGATG	1 cut(s)	975
BstH2I	RGCGCY	1 cut(s)	940
BstHHI	GCGC	5 cut(s)	196, 247, 405, 534, 939
BstKTI	GATC	3 cut(s)	33, 136, 764
BstMAI	GTCTC	3 cut(s)	200, 425, 603
BstMBI	GATC	3 cut(s)	30, 133, 761
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 902
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	2 cut(s)	303, 581
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	582
BstSNI	TACGTA	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	2 cut(s)	182, 522
BsuRI	GGCC	2 cut(s)	231, 956
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	975
Cac8I	GCNNGC	2 cut(s)	188, 192
CfoI	GCGC	5 cut(s)	196, 247, 405, 534, 939
Cfr13I	GGNCC	2 cut(s)	229, 745
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	722, 754
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviJI	RGCY	9 cut(s)	231, 356, 417, 563, 587, 653, 798, 820, 956
CviKI_1	RGCY	9 cut(s)	231, 356, 417, 563, 587, 653, 798, 820, 956
CviQI	GTAC	2 cut(s)	722, 754
DdeI	CTNAG	2 cut(s)	634, 963
DpnI	GATC	3 cut(s)	32, 135, 763
DpnII	GATC	3 cut(s)	30, 133, 761
DraI	TTTAAA	1 cut(s)	861
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	485
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	563
Eco105I	TACGTA	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	3 cut(s)	419, 565, 822
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	745
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	3 cut(s)	231, 456, 784
EcoICRI	GAGCTC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	3 cut(s)	419, 565, 822
ErhI	CCWWGG	1 cut(s)	175
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	3 cut(s)	167, 579, 742
FauI	CCCGC	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	962
FriOI	GRGCYC	3 cut(s)	419, 565, 822
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	2 cut(s)	195, 246
GlaI	GCGC	5 cut(s)	195, 246, 404, 533, 938
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	940
HaeIII	GGCC	2 cut(s)	231, 956
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	5 cut(s)	196, 247, 405, 534, 939
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	5 cut(s)	194, 245, 403, 532, 937
HinP1I	GCGC	5 cut(s)	194, 245, 403, 532, 937
HinfI	GANTC	1 cut(s)	842
HphI	GGTGA	2 cut(s)	31, 110
Hpy188I	TCNGA	2 cut(s)	76, 761
Hpy188III	TCNNGA	2 cut(s)	137, 678
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	924, 1013
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	538, 789, 855
HpyCH4V	TGCA	4 cut(s)	25, 170, 662, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 902
HpyF3I	CTNAG	2 cut(s)	634, 963
HpySE526I	ACGT	3 cut(s)	538, 789, 855
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	5 cut(s)	194, 245, 403, 532, 937
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	30, 133, 761
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	2 cut(s)	368, 560
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	12
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	3 cut(s)	538, 789, 855
MaeIII	GTNAC	3 cut(s)	98, 737, 785
MalI	GATC	3 cut(s)	32, 135, 763
MboI	GATC	3 cut(s)	30, 133, 761
MboII	GAAGA	4 cut(s)	224, 472, 511, 844
MhlI	GDGCHC	4 cut(s)	114, 419, 565, 822
MluCI	AATT	9 cut(s)	256, 332, 458, 509, 552, 657, 770, 999, 1011
MmeI	TCCRAC	2 cut(s)	326, 948
MnlI	CCTC	4 cut(s)	127, 130, 499, 946
MseI	TTAA	4 cut(s)	615, 824, 860, 1039
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	659, 902
NdeII	GATC	3 cut(s)	30, 133, 761
NmuCI	GTSAC	2 cut(s)	98, 785
NsbI	TGCGCA	2 cut(s)	195, 246
NspI	RCATGY	2 cut(s)	303, 581
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	842
PkrI	GCNGC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	229, 745
RsaI	GTAC	2 cut(s)	723, 755
RsaNI	GTAC	2 cut(s)	722, 754
RseI	CAYNNNNRTG	1 cut(s)	520
SacI	GAGCTC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	4 cut(s)	615, 824, 860, 1039
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	30, 133, 761
Sau96I	GGNCC	2 cut(s)	229, 745
ScaI	AGTACT	1 cut(s)	755
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	4 cut(s)	114, 419, 565, 822
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SnaBI	TACGTA	1 cut(s)	539
Sse9I	AATT	9 cut(s)	256, 332, 458, 509, 552, 657, 770, 999, 1011
SsiI	CCGC	2 cut(s)	123, 420
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	621
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	3 cut(s)	541, 792, 858
TaqI	TCGA	1 cut(s)	986
TasI	AATT	9 cut(s)	256, 332, 458, 509, 552, 657, 770, 999, 1011
TatI	WGTACW	2 cut(s)	721, 753
TfiI	GAWTC	1 cut(s)	842
Tru1I	TTAA	4 cut(s)	615, 824, 860, 1039
Tru9I	TTAA	4 cut(s)	615, 824, 860, 1039
TseFI	GTSAC	2 cut(s)	98, 785
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	98, 785
TspDTI	ATGAA	6 cut(s)	326, 451, 471, 579, 654, 1032
TspGWI	ACGGA	2 cut(s)	41, 835
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	6 cut(s)	256, 332, 458, 509, 770, 1011
XceI	RCATGY	2 cut(s)	303, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XspI	CTAG	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.