Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003144.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

67719 .. 72772

Gene Structure 5054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

atgacacaaggaggaggagacggggaagccgttgcggcggtggcggtgaagaagaagtcgtctcggagctgggtttcgctggacgcgacgggacaagcgacggtgttggatgtggacaagtacgctatcatgcagagagtccacattcacgctcgggatctccgcattgtcgaccctctgctttcttacccttccgccattctcggacgtgacagggctattgttctcaatctggaggtgctgcttcgggatccgttggatgaaaatgttattcctgttgttgaagagcttcagagacggttgcctcctgtaaattccaaccgtgaaaatcaaacagatggaagtgagttccctgttgacgcggctgaagaagatggtatgtctgaataccgagttttcaatgtagagtcttcacttgaattccgggccttggaggtagccttggaagcaatttgtagttttcttgctgcacgtacgacagaactggagactgctgcttatccggctctagatgagcttacctctaagattagtagccgcaatttggatagggttcgtaaattgaaaagtgcaatgacaaggttgactgcacgggtccaaaaggtgctgcttcgggatccgttggatgaaaatgttattcctgttgttgaagagcttcagagacggttgactcctgtaaattccaaccgtgaaaatcaaacagatggaagtgagttccctgttgacgaggctgaagaagatggtatagtgctgcttcgggatccgttggatgaaaatgttattcctgttgttgaagagcttcagagacggttgcctcctgtaaattccaaccgtgaaaatcaaacagatggaagtgagttccctgttgacgcggctgaagaagatggtatgtctgaataccgagttttcaatgtagagtcttcacttgaattccgggccttggaggtagccttggaagcaatttgtagttttcttgctgcacgtacgacagaactggagactgctgcttatccggctctagatgagcttacctctaagattagtagccgcaatttggatagggttcgtaaattgaaaagtgcaatgacaaggttgactgcacgggtccaaaaggtgagggatgagctcgagcagctgctggatgatgatgatgatatggccgacctttacttgtcaagaaagttggtgggtgcatgttcaccagttagtgcctctggtcctcccaattggtatcctgcctcctctaccataggctcaatatcacgggcaagtagagcaagtatggtaactgttcgtggagatgagaatgacgttgacgaacttgaaatgttactggaggcttactttatgcagattgatggcaccttgaacaagttagctacgctgcgtgaatatattgatgatacggaggattacataaatattcagctcgataaccacaggaatcagttaattcaggtgcttactgctctgcactggtttcgtttcttcatacttcttgcttcctgtttgcttgctaaatctggagtagttgtttatgacattaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

517

Amino Acids

57.91

Weight (kDa)

4.62

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	27 - 209	1.2e-08	Magnesium transporter MRS2-like
MRS2-like	PF22099	306 - 394	3.8e-12	Magnesium transporter MRS2-like
MRS2-like	PF22099	434 - 481	1e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1361
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	3 cut(s)	86, 362, 872
AciI	CCGC	9 cut(s)	35, 38, 44, 163, 195, 362, 538, 872, 1048
AclWI	GGATC	7 cut(s)	165, 245, 258, 611, 624, 755, 768
AcoI	YGGCCR	1 cut(s)	1158
AcsI	RAATTY	5 cut(s)	313, 419, 679, 823, 929
AcuI	CTGAAG	6 cut(s)	275, 387, 641, 753, 785, 897
AfaI	GTAC	3 cut(s)	122, 475, 985
AfiI	CCNNNNNNNGG	4 cut(s)	430, 544, 940, 1054
AjiI	CACGTC	1 cut(s)	209
Alw21I	GWGCWC	1 cut(s)	1128
Alw26I	GTCTC	7 cut(s)	12, 66, 289, 482, 655, 799, 992
AlwI	GGATC	7 cut(s)	165, 245, 258, 611, 624, 755, 768
AlwNI	CAGNNNCTG	1 cut(s)	1138
Ama87I	CYCGRG	2 cut(s)	153, 1127
AoxI	GGCC	3 cut(s)	426, 936, 1158
ApoI	RAATTY	5 cut(s)	313, 419, 679, 823, 929
Asp700I	GAANNNNTTC	3 cut(s)	288, 654, 798
AspS9I	GGNCC	5 cut(s)	426, 595, 936, 1105, 1217
AsuC2I	CCSGG	2 cut(s)	425, 935
AsuHPI	GGTGA	3 cut(s)	58, 1126, 1191
AvaI	CYCGRG	2 cut(s)	153, 1127
AvaII	GGWCC	3 cut(s)	595, 1105, 1217
BamHI	GGATCC	3 cut(s)	250, 616, 760
BanI	GGYRCC	1 cut(s)	1361
BanII	GRGCYC	1 cut(s)	1128
BbsI	GAAGAC	2 cut(s)	402, 912
Bbv12I	GWGCWC	1 cut(s)	1128
BccI	CCATC	7 cut(s)	332, 368, 698, 734, 842, 878, 1352
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	1463, 1497
BciVI	GTATCC	1 cut(s)	1242
BcnI	CCSGG	2 cut(s)	425, 935
BcoDI	GTCTC	7 cut(s)	12, 66, 289, 482, 655, 799, 992
BfaI	CTAG	2 cut(s)	509, 1019
BfuI	GTATCC	1 cut(s)	1242
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	425, 935
Bme18I	GGWCC	3 cut(s)	595, 1105, 1217
BmeT110I	CYCGRG	2 cut(s)	153, 1127
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	5 cut(s)	426, 595, 936, 1105, 1217
BmiI	GGNNCC	6 cut(s)	252, 596, 618, 762, 1106, 1363
BmrFI	CCNGG	2 cut(s)	425, 935
BpiI	GAAGAC	2 cut(s)	402, 912
BplI	GAGNNNNNCTC	4 cut(s)	506, 538, 1016, 1048
BpmI	CTGGAG	5 cut(s)	254, 506, 1016, 1355, 1545
BpuMI	CCSGG	2 cut(s)	425, 935
BsaAI	YACGTR	2 cut(s)	473, 983
BsaJI	CCNNGG	4 cut(s)	429, 441, 939, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	1518, 1548
Bsc4I	CCNNNNNNNGG	4 cut(s)	430, 544, 940, 1054
Bse1I	ACTGG	5 cut(s)	489, 999, 1202, 1338, 1481
Bse3DI	GCAATG	2 cut(s)	579, 1089
BseDI	CCNNGG	4 cut(s)	429, 441, 939, 951
BseGI	GGATG	6 cut(s)	115, 265, 631, 775, 1126, 1147
BseLI	CCNNNNNNNGG	4 cut(s)	430, 544, 940, 1054
BseMI	GCAATG	2 cut(s)	579, 1089
BseNI	ACTGG	5 cut(s)	489, 999, 1202, 1338, 1481
BseRI	GAGGAG	3 cut(s)	27, 30, 1231
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	5 cut(s)	453, 573, 963, 1083, 1457
Bsh1236I	CGCG	3 cut(s)	86, 362, 872
BshFI	GGCC	3 cut(s)	428, 938, 1160
BshNI	GGYRCC	1 cut(s)	1361
BsiHKAI	GWGCWC	1 cut(s)	1128
BsiHKCI	CYCGRG	2 cut(s)	153, 1127
BsiSI	CCGG	4 cut(s)	424, 503, 934, 1013
BsiWI	CGTACG	2 cut(s)	473, 983
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	430, 544, 940, 1054
BsmAI	GTCTC	7 cut(s)	12, 66, 289, 482, 655, 799, 992
BsmBI	CGTCTC	5 cut(s)	12, 66, 289, 655, 799
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	428, 938, 1160
BsoBI	CYCGRG	2 cut(s)	153, 1127
Bsp1286I	GDGCHC	1 cut(s)	1128
Bsp143I	GATC	4 cut(s)	157, 250, 616, 760
BspACI	CCGC	9 cut(s)	35, 38, 44, 163, 195, 362, 538, 872, 1048
BspANI	GGCC	3 cut(s)	428, 938, 1160
BspFNI	CGCG	3 cut(s)	86, 362, 872
BspLI	GGNNCC	6 cut(s)	252, 596, 618, 762, 1106, 1363
BspPI	GGATC	7 cut(s)	165, 245, 258, 611, 624, 755, 768
BspQI	GCTCTTC	3 cut(s)	279, 645, 789
BspT107I	GGYRCC	1 cut(s)	1361
BsrDI	GCAATG	2 cut(s)	579, 1089
BsrI	ACTGG	5 cut(s)	489, 999, 1202, 1338, 1481
BssECI	CCNNGG	4 cut(s)	429, 441, 939, 951
BssMI	GATC	4 cut(s)	157, 250, 616, 760
BssT1I	CCWWGG	4 cut(s)	429, 441, 939, 951
Bst4CI	ACNGT	8 cut(s)	103, 300, 323, 666, 689, 810, 833, 1291
Bst6I	CTCTTC	3 cut(s)	279, 645, 789
BstBAI	YACGTR	2 cut(s)	473, 983
BstC8I	GCNNGC	1 cut(s)	1515
BstDEI	CTNAG	2 cut(s)	525, 1035
BstF5I	GGATG	6 cut(s)	115, 265, 631, 775, 1126, 1147
BstFNI	CGCG	3 cut(s)	86, 362, 872
BstKTI	GATC	4 cut(s)	160, 253, 619, 763
BstMAI	GTCTC	7 cut(s)	12, 66, 289, 482, 655, 799, 992
BstMBI	GATC	4 cut(s)	157, 250, 616, 760
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 41, 446, 503, 956, 1013, 1132, 1274
BstNSI	RCATGY	1 cut(s)	1197
BstSCI	CCNGG	2 cut(s)	423, 933
BstUI	CGCG	3 cut(s)	86, 362, 872
BstV2I	GAAGAC	2 cut(s)	402, 912
BstX2I	RGATCY	4 cut(s)	157, 250, 616, 760
BstYI	RGATCY	4 cut(s)	157, 250, 616, 760
BsuI	GTATCC	1 cut(s)	1242
BsuRI	GGCC	3 cut(s)	428, 938, 1160
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	6 cut(s)	115, 265, 631, 775, 1126, 1147
BtsIMutI	CAGTG	1 cut(s)	1474
Cac8I	GCNNGC	1 cut(s)	1515
CaiI	CAGNNNCTG	1 cut(s)	1138
Cfr13I	GGNCC	5 cut(s)	426, 595, 936, 1105, 1217
CseI	GACGC	3 cut(s)	92, 368, 878
Csp6I	GTAC	3 cut(s)	121, 474, 984
CviAII	CATG	2 cut(s)	130, 1194
CviQI	GTAC	3 cut(s)	121, 474, 984
DdeI	CTNAG	2 cut(s)	525, 1035
DpnI	GATC	4 cut(s)	159, 252, 618, 762
DpnII	GATC	4 cut(s)	157, 250, 616, 760
EaeI	YGGCCR	1 cut(s)	1158
Eam1104I	CTCTTC	3 cut(s)	279, 645, 789
EarI	CTCTTC	3 cut(s)	279, 645, 789
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	1126
Eco130I	CCWWGG	4 cut(s)	429, 441, 939, 951
Eco24I	GRGCYC	1 cut(s)	1128
Eco47I	GGWCC	3 cut(s)	595, 1105, 1217
Eco53kI	GAGCTC	1 cut(s)	1126
Eco57I	CTGAAG	6 cut(s)	275, 387, 641, 753, 785, 897
Eco88I	CYCGRG	2 cut(s)	153, 1127
EcoICRI	GAGCTC	1 cut(s)	1126
EcoRI	GAATTC	2 cut(s)	419, 929
EcoT14I	CCWWGG	4 cut(s)	429, 441, 939, 951
EcoT38I	GRGCYC	1 cut(s)	1128
ErhI	CCWWGG	4 cut(s)	429, 441, 939, 951
Esp3I	CGTCTC	5 cut(s)	12, 66, 289, 655, 799
FaeI	CATG	2 cut(s)	133, 1197
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	129, 1193
FblI	GTMKAC	1 cut(s)	171
FokI	GGATG	6 cut(s)	122, 272, 638, 782, 1133, 1154
FriOI	GRGCYC	1 cut(s)	1128
FspBI	CTAG	2 cut(s)	509, 1019
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	5 cut(s)	254, 506, 1016, 1355, 1545
HaeIII	GGCC	3 cut(s)	428, 938, 1160
HapII	CCGG	4 cut(s)	424, 503, 934, 1013
HgaI	GACGC	3 cut(s)	92, 368, 878
Hin1II	CATG	2 cut(s)	133, 1197
HincII	GTYRAC	8 cut(s)	172, 358, 585, 669, 724, 868, 1095, 1315
HindII	GTYRAC	8 cut(s)	172, 358, 585, 669, 724, 868, 1095, 1315
HinfI	GANTC	5 cut(s)	138, 407, 670, 917, 1444
HpaII	CCGG	4 cut(s)	424, 503, 934, 1013
HphI	GGTGA	3 cut(s)	58, 1126, 1191
Hpy188I	TCNGA	7 cut(s)	66, 206, 294, 385, 660, 804, 895
Hpy188III	TCNNGA	9 cut(s)	155, 233, 248, 509, 614, 758, 1019, 1176, 1524
Hpy99I	CGWCG	2 cut(s)	91, 103
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	8 cut(s)	103, 300, 323, 666, 689, 810, 833, 1291
HpyCH4IV	ACGT	4 cut(s)	208, 472, 982, 1311
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 41, 446, 503, 956, 1013, 1132, 1274
HpyF3I	CTNAG	2 cut(s)	525, 1035
HpySE526I	ACGT	4 cut(s)	208, 472, 982, 1311
Hsp92II	CATG	2 cut(s)	133, 1197
Kzo9I	GATC	4 cut(s)	157, 250, 616, 760
LguI	GCTCTTC	3 cut(s)	279, 645, 789
LmnI	GCTCC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	509, 1019
MaeII	ACGT	4 cut(s)	208, 472, 982, 1311
MaeIII	GTNAC	3 cut(s)	209, 1285, 1329
MalI	GATC	4 cut(s)	159, 252, 618, 762
MboI	GATC	4 cut(s)	157, 250, 616, 760
MfeI	CAATTG	1 cut(s)	1225
MflI	RGATCY	4 cut(s)	157, 250, 616, 760
MhlI	GDGCHC	1 cut(s)	1128
MlyI	GAGTC	4 cut(s)	147, 416, 664, 926
MmeI	TCCRAC	7 cut(s)	87, 237, 342, 603, 708, 747, 852
MroXI	GAANNNNTTC	3 cut(s)	288, 654, 798
MseI	TTAA	3 cut(s)	1451, 1545, 1552
MspA1I	CMGCKG	1 cut(s)	1135
MspI	CCGG	4 cut(s)	424, 503, 934, 1013
MspR9I	CCNGG	2 cut(s)	425, 935
MunI	CAATTG	1 cut(s)	1225
MvnI	CGCG	3 cut(s)	86, 362, 872
MwoI	GCNNNNNNNGC	8 cut(s)	35, 41, 446, 503, 956, 1013, 1132, 1274
NciI	CCSGG	2 cut(s)	425, 935
NdeII	GATC	4 cut(s)	157, 250, 616, 760
NlaIII	CATG	2 cut(s)	133, 1197
NlaIV	GGNNCC	6 cut(s)	252, 596, 618, 762, 1106, 1363
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	1197
PaeR7I	CTCGAG	1 cut(s)	1127
PciSI	GCTCTTC	3 cut(s)	279, 645, 789
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 83, 95
PdmI	GAANNNNTTC	3 cut(s)	288, 654, 798
PfeI	GAWTC	1 cut(s)	1444
Pfl23II	CGTACG	2 cut(s)	473, 983
PleI	GAGTC	4 cut(s)	146, 415, 664, 925
PpsI	GAGTC	4 cut(s)	146, 415, 664, 925
Ppu21I	YACGTR	2 cut(s)	473, 983
Psp124BI	GAGCTC	1 cut(s)	1128
PspFI	CCCAGC	1 cut(s)	69
PspLI	CGTACG	2 cut(s)	473, 983
PspN4I	GGNNCC	6 cut(s)	252, 596, 618, 762, 1106, 1363
PspPI	GGNCC	5 cut(s)	426, 595, 936, 1105, 1217
PspXI	VCTCGAGB	1 cut(s)	1127
PstNI	CAGNNNCTG	1 cut(s)	1138
PsuI	RGATCY	4 cut(s)	157, 250, 616, 760
PvuII	CAGCTG	1 cut(s)	1135
RsaI	GTAC	3 cut(s)	122, 475, 985
RsaNI	GTAC	3 cut(s)	121, 474, 984
SacI	GAGCTC	1 cut(s)	1128
SalI	GTCGAC	1 cut(s)	170
SapI	GCTCTTC	3 cut(s)	279, 645, 789
SaqAI	TTAA	3 cut(s)	1451, 1545, 1552
Sau3AI	GATC	4 cut(s)	157, 250, 616, 760
Sau96I	GGNCC	5 cut(s)	426, 595, 936, 1105, 1217
SchI	GAGTC	4 cut(s)	147, 416, 664, 926
ScrFI	CCNGG	2 cut(s)	425, 935
SduI	GDGCHC	1 cut(s)	1128
Sfr274I	CTCGAG	1 cut(s)	1127
SinI	GGWCC	3 cut(s)	595, 1105, 1217
SlaI	CTCGAG	1 cut(s)	1127
SmlI	CTYRAG	1 cut(s)	1127
SmoI	CTYRAG	1 cut(s)	1127
SsiI	CCGC	9 cut(s)	35, 38, 44, 163, 195, 362, 538, 872, 1048
SspI	AATATT	1 cut(s)	1423
SspMI	CTAG	2 cut(s)	509, 1019
SstI	GAGCTC	1 cut(s)	1128
StyD4I	CCNGG	2 cut(s)	423, 933
StyI	CCWWGG	4 cut(s)	429, 441, 939, 951
TaaI	ACNGT	8 cut(s)	103, 300, 323, 666, 689, 810, 833, 1291
TaiI	ACGT	4 cut(s)	211, 475, 985, 1314
TaqI	TCGA	3 cut(s)	171, 1128, 1431
TauI	GCSGC	5 cut(s)	38, 365, 540, 875, 1050
TfiI	GAWTC	1 cut(s)	1444
Tru1I	TTAA	3 cut(s)	1451, 1545, 1552
Tru9I	TTAA	3 cut(s)	1451, 1545, 1552
TscAI	CASTG	1 cut(s)	1481
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	276, 642, 786, 1480
TspGWI	ACGGA	4 cut(s)	243, 609, 753, 1421
TspRI	CASTG	1 cut(s)	1481
VpaK11BI	GGWCC	3 cut(s)	595, 1105, 1217
XapI	RAATTY	5 cut(s)	313, 419, 679, 823, 929
XbaI	TCTAGA	2 cut(s)	508, 1018
XceI	RCATGY	1 cut(s)	1197
XhoI	CTCGAG	1 cut(s)	1127
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	3 cut(s)	288, 654, 798
XspI	CTAG	2 cut(s)	509, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.