Rmu_sc0003151.1_g000022

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003151.1
N/A
Physical Location & Seq
Forward (+)
58757 .. 61934
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
atgctatcctgccgccaccagacagggaacaatttggtgatgtttttcctctctcgcggcgctgggctagagagaactagagattctcagttgagtcctcgaagtgaagatggagcatccagctacaggccttggaagccagagtggaataagttttcagtgacggagaaggcgaggttgaaggcaaggcaaggagtgaggacggttgggctgacagaggcagatgtagtggatccggattcatgtttaagcgtgaagcgaaacgggttggatgttggagaaattgtcatgcgaggcaggtggttttacacccacaacgtctgggttatgcacccagacgagtatctggagatgggtgtagggattgttgtggtgattggtggtggagatggggctgagattagaattaggattttggtgggattagaagtggggttgagtttggtggttatgagtttggaaggtggaggagatgaggtgctcgccggggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

164

Amino Acids

18.02

Weight (kDa)

5.93

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 288
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 13, 57
AclWI GGATC 2 cut(s) 227, 240
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 483
AlwI GGATC 2 cut(s) 227, 240
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 49, 385
BamHI GGATCC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 483
BccI CCATC 3 cut(s) 104, 346, 383
BcnI CCSGG 1 cut(s) 487
BfaI CTAG 3 cut(s) 68, 78, 493
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 13, 58
BlsI GCNGC 2 cut(s) 14, 59
Bme1390I CCNGG 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 131, 486
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 131, 486
BseGI GGATG 2 cut(s) 116, 277
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 101, 387
BseRI GAGGAG 1 cut(s) 483
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 2 cut(s) 236, 486
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 2 cut(s) 13, 57
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 100, 388
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 234
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 227, 240
BssECI CCNNGG 2 cut(s) 131, 486
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 87, 396
BstF5I GGATG 2 cut(s) 116, 277
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 116, 277
BtsIMutI CAGTG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 1 cut(s) 62
CviAII CATG 2 cut(s) 243, 289
CviJI RGCY 6 cut(s) 67, 123, 130, 139, 211, 395
CviKI_1 RGCY 6 cut(s) 67, 123, 130, 139, 211, 395
DdeI CTNAG 2 cut(s) 87, 396
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 131
Eco147I AGGCCT 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 246, 292
FaiI YATR 4 cut(s) 244, 290, 329, 452
FatI CATG 2 cut(s) 242, 288
Fnu4HI GCNGC 2 cut(s) 13, 58
FokI GGATG 2 cut(s) 103, 284
Fsp4HI GCNGC 2 cut(s) 13, 58
FspBI CTAG 3 cut(s) 68, 78, 493
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 13, 58
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 236, 486
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 246, 292
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 3 cut(s) 83, 94, 239
HpaII CCGG 2 cut(s) 236, 486
HphI GGTGA 2 cut(s) 49, 385
Hpy188III TCNNGA 2 cut(s) 236, 347
HpyAV CCTTC 3 cut(s) 163, 175, 455
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 2 cut(s) 87, 396
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 246, 292
HspAI GCGC 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 113
LweI GCATC 1 cut(s) 125
MaeI CTAG 3 cut(s) 68, 78, 493
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 3 cut(s) 31, 282, 405
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 2 cut(s) 249, 256
MnlI CCTC 8 cut(s) 59, 108, 168, 192, 211, 287, 461, 469
MroI TCCGGA 1 cut(s) 235
MseI TTAA 1 cut(s) 248
MspI CCGG 2 cut(s) 236, 486
MspR9I CCNGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 487
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 246, 292
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 288
PceI AGGCCT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PfeI GAWTC 2 cut(s) 83, 239
PkrI GCNGC 2 cut(s) 14, 59
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 232
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 13, 58
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 483
SetI ASST 6 cut(s) 125, 179, 302, 321, 466, 480
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 31, 282, 405
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 2 cut(s) 13, 57
SspMI CTAG 3 cut(s) 68, 78, 493
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 100
TasI AATT 3 cut(s) 31, 282, 405
TauI GCSGC 2 cut(s) 15, 60
TfiI GAWTC 2 cut(s) 83, 239
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 165
XspI CTAG 3 cut(s) 68, 78, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.