Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

66573 .. 67598

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgcactatgaagctttgtctgttcaaaatagaatggaaatggcaggagttagtccagacatggtgacatacaattctcttatgtatggattttgtagagaaggaaggatgacagaagctgtaaaacttttccgcgatatcaaaggttgtgttcctaatcatataacttacactacattgattgatgggtattgtagagtgaatgacctggaagaagctttaagattgtgtgaggttatgaagtctaaggagttgtatcctggagttgttacttataattctattcttcgcaacttgtgtcaagaaggcaggatgagggatgcgaataagcttttgaatgagatgagtgaaaagaatgttgagcctgacaatgtcacatgtaacaccctgattaatgcttattgcaaaatcggagatatgatgtctgcagtgaaagtgaagaacaggatgttggcatctgggttgaagctggatgaatttacatataaagcactcattcatggattttgtatggtaccggaaatggacggtgctaaagatcttttatttagcatgcttgatgcggggttttgcccaagttattgcacatatacatggattatagatgcttactgcaaccaaggcaatgaagaagcagttataagattaccagatgagtttgttagaaaaggtattgttgttgatgtctctctgtacagggctttaataaggaggttatgtaaacgagaaaggctagattgtgctgaaaaggtttacagtttaatgcaagagaagggtatattagcagacagtgtagtatttactagtctagcatatgcttacttgaaagcaggaaaatcaagtgtagtttcagggatgttagatgaaatgttcaaaaggaggttgatggtaacacgcaagatctacaggtctttcaatgcatcatatgccagtgaaaatgacatcttacgtctcttttgggagcatatggtcgagagaggcctgatgtcaaaaactgttatgattacggaaatgcagcaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

341

Amino Acids

39.13

Weight (kDa)

7.43

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	16 - 46	1.8e-12	PPR repeat
PPR_2	PF13041	19 - 66	3.7e-17	PPR repeat family
PPR	PF01535	22 - 49	1.2e-07	PPR repeat
TPR_24	PF23276	39 - 146	7.4e-12	Fungal tetratrico peptide repeats
PPR_3	PF13812	47 - 97	8.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	48 - 81	3.6e-14	PPR repeat
PPR_2	PF13041	52 - 101	5.5e-15	PPR repeat family
PPR	PF01535	55 - 83	6.7e-08	PPR repeat
PPR_long	PF17177	70 - 166	1.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	84 - 116	4.8e-09	PPR repeat
PPR_2	PF13041	87 - 128	4.5e-14	PPR repeat family
PPR	PF01535	90 - 120	9.1e-07	PPR repeat
PPR_1	PF12854	118 - 150	1.1e-08	PPR repeat
PPR_2	PF13041	122 - 170	1.5e-15	PPR repeat family
PPR	PF01535	125 - 155	2.1e-06	PPR repeat
PPR_2	PF13041	228 - 273	4.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	276, 641
Acc65I	GGTACC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	514
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 563
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	2 cut(s)	516, 695
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	26, 337, 466, 826, 874, 916
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	2 cut(s)	207, 259
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	5 cut(s)	14, 119, 218, 331, 469
AluI	AGCT	5 cut(s)	14, 119, 218, 331, 469
Alw26I	GTCTC	2 cut(s)	691, 956
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	979
ApeKI	GCWGC	1 cut(s)	1015
ApoI	RAATTY	1 cut(s)	476
AseI	ATTAAT	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	514
AsuHPI	GGTGA	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	514
BccI	CCATC	2 cut(s)	179, 880
BciT130I	CCWGG	2 cut(s)	209, 261
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	691, 956
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	3 cut(s)	734, 804, 809
BfmI	CTRYAG	2 cut(s)	426, 904
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	2 cut(s)	538, 900
BisI	GCNGC	1 cut(s)	1016
BlsI	GCNGC	1 cut(s)	1017
Bme1390I	CCNGG	2 cut(s)	209, 261
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	209, 261
BmsI	GCATC	5 cut(s)	310, 464, 550, 595, 929
BpmI	CTGGAG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bse1I	ACTGG	1 cut(s)	930
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	209, 261
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	6 cut(s)	114, 318, 325, 453, 478, 861
BseMI	GCAATG	1 cut(s)	631
BseNI	ACTGG	1 cut(s)	930
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	981
BshNI	GGYRCC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	518
BsmAI	GTCTC	2 cut(s)	691, 956
BsmBI	CGTCTC	1 cut(s)	956
BsnI	GGCC	1 cut(s)	981
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	538, 900
BspACI	CCGC	2 cut(s)	133, 563
BspANI	GGCC	1 cut(s)	981
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	631
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	930
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	2 cut(s)	538, 900
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	209, 261
Bst4CI	ACNGT	4 cut(s)	530, 758, 791, 997
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	6 cut(s)	114, 318, 325, 453, 478, 861
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	541, 903
BstMAI	GTCTC	2 cut(s)	691, 956
BstMBI	GATC	2 cut(s)	538, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	621, 926
BstNI	CCWGG	2 cut(s)	209, 261
BstNSI	RCATGY	2 cut(s)	381, 556
BstSCI	CCNGG	2 cut(s)	207, 259
BstSFI	CTRYAG	2 cut(s)	426, 904
BstUI	CGCG	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	538, 900
BstYI	RGATCY	2 cut(s)	538, 900
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	981
BtsCI	GGATG	6 cut(s)	114, 318, 325, 453, 478, 861
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	435, 796, 937
Cac8I	GCNNGC	1 cut(s)	554
CaiI	CAGNNNCTG	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	515, 694
CviAII	CATG	5 cut(s)	61, 378, 500, 553, 594
CviJI	RGCY	9 cut(s)	14, 119, 218, 331, 364, 469, 701, 733, 981
CviKI_1	RGCY	9 cut(s)	14, 119, 218, 331, 364, 469, 701, 733, 981
CviQI	GTAC	2 cut(s)	515, 694
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	540, 902
DpnII	GATC	2 cut(s)	538, 900
Eco130I	CCWWGG	1 cut(s)	619
Eco147I	AGGCCT	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	207, 259
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	956
FaeI	CATG	5 cut(s)	64, 381, 503, 556, 597
FatI	CATG	5 cut(s)	60, 377, 499, 552, 593
FauI	CCCGC	1 cut(s)	556
FauNDI	CATATG	3 cut(s)	814, 925, 966
Fnu4HI	GCNGC	1 cut(s)	1016
FokI	GGATG	6 cut(s)	121, 325, 332, 460, 485, 868
Fsp4HI	GCNGC	1 cut(s)	1016
FspBI	CTAG	3 cut(s)	734, 804, 809
GluI	GCNGC	1 cut(s)	1016
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	981
HapII	CCGG	1 cut(s)	518
Hin1II	CATG	5 cut(s)	64, 381, 503, 556, 597
HindIII	AAGCTT	3 cut(s)	12, 216, 329
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	722, 754
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	3 cut(s)	56, 302, 973
Hpy8I	GTNNAC	2 cut(s)	722, 754
HpyAV	CCTTC	4 cut(s)	95, 99, 299, 766
HpyCH4III	ACNGT	4 cut(s)	530, 758, 791, 997
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	8 cut(s)	4, 405, 428, 585, 615, 766, 920, 1015
HpyF10VI	GCNNNNNNNGC	2 cut(s)	621, 926
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	949
Hsp92II	CATG	5 cut(s)	64, 381, 503, 556, 597
KpnI	GGTACC	1 cut(s)	518
Kzo9I	GATC	2 cut(s)	538, 900
LmnI	GCTCC	1 cut(s)	961
LweI	GCATC	5 cut(s)	310, 464, 550, 595, 929
MaeI	CTAG	3 cut(s)	734, 804, 809
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	5 cut(s)	64, 268, 373, 380, 889
MalI	GATC	2 cut(s)	540, 902
MboI	GATC	2 cut(s)	538, 900
MboII	GAAGA	4 cut(s)	224, 278, 451, 641
MflI	RGATCY	2 cut(s)	538, 900
MluCI	AATT	3 cut(s)	73, 277, 476
MnlI	CCTC	5 cut(s)	226, 309, 705, 873, 971
Mph1103I	ATGCAT	1 cut(s)	922
MseI	TTAA	4 cut(s)	221, 393, 704, 761
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	209, 261
MvaI	CCWGG	2 cut(s)	209, 261
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	621, 926
NdeI	CATATG	3 cut(s)	814, 925, 966
NdeII	GATC	2 cut(s)	538, 900
NlaIII	CATG	5 cut(s)	64, 381, 503, 556, 597
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	64, 373
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	2 cut(s)	381, 556
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	981
PciI	ACATGT	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	1017
PscI	ACATGT	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	2 cut(s)	276, 641
Psp6I	CCWGG	2 cut(s)	207, 259
PspGI	CCWGG	2 cut(s)	207, 259
PspN4I	GGNNCC	1 cut(s)	516
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	538, 900
PsyI	GACNNNGTC	1 cut(s)	371
RsaI	GTAC	2 cut(s)	516, 695
RsaNI	GTAC	2 cut(s)	515, 694
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	221, 393, 704, 761
SatI	GCNGC	1 cut(s)	1016
Sau3AI	GATC	2 cut(s)	538, 900
ScrFI	CCNGG	2 cut(s)	209, 261
SfaNI	GCATC	5 cut(s)	310, 464, 550, 595, 929
SfcI	CTRYAG	2 cut(s)	426, 904
SmiMI	CAYNNNNRTG	1 cut(s)	592
SpeI	ACTAGT	1 cut(s)	803
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	3 cut(s)	73, 277, 476
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	2 cut(s)	133, 563
SspMI	CTAG	3 cut(s)	734, 804, 809
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	2 cut(s)	207, 259
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	4 cut(s)	530, 758, 791, 997
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	1 cut(s)	972
TasI	AATT	3 cut(s)	73, 277, 476
TatI	WGTACW	1 cut(s)	693
Tru1I	TTAA	4 cut(s)	221, 393, 704, 761
Tru9I	TTAA	4 cut(s)	221, 393, 704, 761
TscAI	CASTG	3 cut(s)	435, 796, 937
TseFI	GTSAC	2 cut(s)	64, 373
TseI	GCWGC	1 cut(s)	1015
Tsp45I	GTSAC	2 cut(s)	64, 373
TspDTI	ATGAA	6 cut(s)	24, 254, 488, 489, 642, 879
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	3 cut(s)	435, 796, 937
Tth111I	GACNNNGTC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	2 cut(s)	381, 556
XspI	CTAG	3 cut(s)	734, 804, 809
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.