Rmu_sc0003151.1_g000026

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003151.1
OG0031246
Physical Location & Seq
Forward (+)
69586 .. 69870
285 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
atggccacaccagtgagaaagcctcgccgcgacacccccgacatgctgacgtggcaagaggtcccccgctctgactctcccgccaccgcctcctccgctcaccgctctcaccaggttgaattttactactttaaccccctcgcactccgggtcgatgacaattggagacgcaattggagagagacccgctctgataccatgttaaacagcgacaagcgtggcccgtggcccaccattgtaccgatattgtcccaacttaaccacccgataggtgttgggttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

94

Amino Acids

10.97

Weight (kDa)

9.96

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 38 3.8e-07 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031246)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003151.1_g000026 Rmu_sc0009639.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 69, 98, 105, 189
AccII CGCG 1 cut(s) 30
AciI CCGC 7 cut(s) 28, 67, 81, 87, 96, 103, 187
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 1 cut(s) 119
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 160, 176
AoxI GGCC 3 cut(s) 3, 220, 227
ApoI RAATTY 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 61, 221, 228
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 92, 101
AvaII GGWCC 1 cut(s) 61
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 160, 176
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 113, 149
Bme18I GGWCC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 61, 221, 228
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 113, 149
BplI GAGNNNNNCTC 4 cut(s) 7, 39, 173, 205
BpuMI CCSGG 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 5, 222, 229
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 2 cut(s) 47, 235
BsmAI GTCTC 2 cut(s) 160, 176
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 47, 235
BsnI GGCC 3 cut(s) 5, 222, 229
Bso31I GGTCTC 1 cut(s) 176
BspACI CCGC 7 cut(s) 28, 67, 81, 87, 96, 103, 187
BspANI GGCC 3 cut(s) 5, 222, 229
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 4 cut(s) 69, 98, 105, 189
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 30
BstMAI GTCTC 2 cut(s) 160, 176
BstMWI GCNNNNNNNGC 2 cut(s) 52, 95
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 111, 147
BstUI CGCG 1 cut(s) 30
BsuRI GGCC 3 cut(s) 5, 222, 229
BtgI CCRYGG 1 cut(s) 224
BtrI CACGTC 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 18
Cfr13I GGNCC 3 cut(s) 61, 221, 228
CseI GACGC 1 cut(s) 177
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 43, 199
CviJI RGCY 4 cut(s) 5, 22, 222, 229
CviKI_1 RGCY 4 cut(s) 5, 22, 222, 229
CviQI GTAC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 46, 202
FaiI YATR 2 cut(s) 44, 200
FaqI GGGAC 2 cut(s) 47, 235
FatI CATG 2 cut(s) 42, 198
FauI CCCGC 3 cut(s) 74, 88, 194
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 3 cut(s) 5, 222, 229
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 46, 202
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 92, 101
Hpy188I TCNGA 2 cut(s) 73, 193
HpyCH4IV ACGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 95
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 2 cut(s) 46, 202
LpnPI CCDG 4 cut(s) 24, 98, 125, 161
MabI ACCWGGT 1 cut(s) 111
MaeII ACGT 1 cut(s) 50
MbiI CCGCTC 4 cut(s) 69, 98, 105, 189
MfeI CAATTG 2 cut(s) 160, 172
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 119, 160, 172
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 33, 52, 100, 103, 149
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 132, 203, 258, 283
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 2 cut(s) 113, 149
MunI CAATTG 2 cut(s) 160, 172
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 52, 95
NciI CCSGG 1 cut(s) 149
NlaIII CATG 2 cut(s) 46, 202
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 11
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 3 cut(s) 61, 221, 228
PspPPI RGGWCCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 4 cut(s) 132, 203, 258, 283
SatI GCNGC 1 cut(s) 28
Sau96I GGNCC 3 cut(s) 61, 221, 228
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 113, 149
SetI ASST 4 cut(s) 53, 63, 117, 274
SexAI ACCWGGT 1 cut(s) 111
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 3 cut(s) 119, 160, 172
SsiI CCGC 7 cut(s) 28, 67, 81, 87, 96, 103, 187
StyD4I CCNGG 2 cut(s) 111, 147
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 119, 160, 172
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 4 cut(s) 132, 203, 258, 283
Tru9I TTAA 4 cut(s) 132, 203, 258, 283
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.