Rmu_sc0003166.1_g000005

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003166.1
N/A
Physical Location & Seq
Reverse (-)
22075 .. 22384
310 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
atgtattttgctatttgtagttacttgttggcggaagcaggtgatacattgtttgcttccttcattagaactaagcagtacaacgatgtgatgaccgatgcaaacatactgcaaggtgctatatttcatgaggatcctgtggaggatactgatgggactaacccacctggaagtcgtatgggaaatggaggatactgctacttctacctccgaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.07

Weight (kDa)

4.31

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 1 cut(s) 32
AclWI GGATC 2 cut(s) 128, 141
AfaI GTAC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 166
AlwI GGATC 2 cut(s) 128, 141
AsuHPI GGTGA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 133
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 2 cut(s) 139, 185
BfuAI ACCTGC 1 cut(s) 29
BfuI GTATCC 2 cut(s) 139, 185
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 128, 141
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuI GTATCC 2 cut(s) 139, 185
BveI ACCTGC 1 cut(s) 29
CciI TCATGA 1 cut(s) 127
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 128
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 107, 122, 129, 179, 217
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 127
Hin1II CATG 1 cut(s) 131
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 101, 112
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 24, 150, 153, 180
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MflI RGATCY 1 cut(s) 133
MnlI CCTC 4 cut(s) 124, 136, 182, 218
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 135
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 43, 118, 169, 210
SfaNI GCATC 1 cut(s) 88
SgeI CNNG 7 cut(s) 37, 51, 125, 140, 149, 179, 180
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 166
TaqII GACCGA 1 cut(s) 110
TatI WGTACW 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 52, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.